Arabidopsis thaliana (thale cress): AT3G04820
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Entry
AT3G04820 CDS
T00041
Name
(RefSeq) Pseudouridine synthase family protein
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
ath
Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ath03016
]
AT3G04820
Enzymes [BR:
ath01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
AT3G04820
Transfer RNA biogenesis [BR:
ath03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
AT3G04820
Prokaryotic type
AT3G04820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
PUS7L_N
Motif
Other DBs
NCBI-GeneID:
819642
NCBI-ProteinID:
NP_187133
TAIR:
AT3G04820
UniProt:
Q5XVC2
A0A384KPV3
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All DBs
Position
3:complement(1321228..1326005)
Genome browser
AA seq
715 aa
AA seq
DB search
MKLSRTVLSCLPSLLKPYSSLSWTTKIATIATNFEGMKTVDEADVGISCFISQLPGFRGI
LKQRYADFIVNEVDMDGNVVHLTSLDLPPEMAVKEEDKAKSCDNVPQNYTSAVESFKSIS
SVTDAERLEILINQVTSGTDGEVLPVVLDPSSDKSKRTAIHNFVKENFKFLVTDTVDGPD
STSKCIRVRVNSGANNNRGNRSKKRKERGDKPFDSRGSEHWPEHVGKFLRFHLYKENKDT
QEALGLIGKMLGVQPKSFGFSGTKDKRSVSTQRVTVFKQQASKLAALNKRLFGIKVGDFC
NVKEGLLLGQLMGNRFTITLRGVVADSEETIKQSAESLGKDGFINYFGLQRFGSGSVPTH
HVGAALLKGEWKDAVDMILDPRETERHVVNDAREYYKETGDIDGTLRQLPRYLVAERAIL
QCLKKCPGNYLQALKGIPRTLRMMYVHSYQSYLWNNAASLRVKNYGTSQVVLGDLVSTKV
DAAKRMVDSLTSEHNESSEEALDCDQVDDTAVVDLPAERSDLVKVVSIEDLEAGTYSTSD
IVLPLPGSRVIYPSNDIAEIYHDLAKKDGISLTESIHGVKEFSITSMTGGYRRVFQKPID
FEWELLTYTDSNKPLAETDLDRIPMNKPVEKVGSTEEIEDESMKSDTNPHDSGETNLKDQ
TDSNEAEKDTGNPDSEQTQMALKMALTLPSSCYATMAIRELLKTSTSVAYHKTLN
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgaaattaagtagaactgtcttgtcttgtttgccgtctctgctaaaaccctactcgagc
ttgagctggacaacgaaaatagcgacgatagctacaaactttgaaggtatgaaaacagta
gatgaagctgacgtgggcatctcctgttttatctcccagctccctggcttccgtggaatc
ctcaaacaaagatacgcagactttattgttaatgaagtagatatggatggtaatgtggtt
catttgacatccttggacttgcctcctgagatggctgtgaaggaggaggataaagcgaaa
agttgtgataatgtaccccaaaattatacttctgcagttgagtctttcaaatctatttcc
agtgttactgatgcagagcgtttggaaatattgatcaatcaagtcacctcaggaactgat
ggtgaagtcttaccagttgttcttgatccaagttctgacaaatccaagagaacggctatc
cacaactttgttaaagagaatttcaagttcctagtgactgacactgtcgacggtcctgat
tctacttcaaaatgcatccgtgtgcgagtgaattcaggagccaataacaacagaggtaat
agatcaaaaaaacgaaaggaaagaggcgataagccttttgatagcagaggttcagagcat
tggccagagcatgttggcaagtttctcaggttccatctttacaaggagaacaaagataca
caagaggccttgggattgattggaaagatgctaggcgttcagccaaagtcattcggattc
tctggaacaaaagataagcggtctgtttctactcagcgtgtaactgtgttcaaacagcaa
gctagcaaattggctgcgcttaacaagagattgtttgggatcaaagttggtgacttctgc
aatgtcaaagagggccttctccttgggcagctcatgggaaacagatttactatcacatta
agaggagtggttgcggattctgaagaaactataaaacaatctgcagaatccttggggaaa
gatggcttcatcaactactttggcttgcagcgttttggaagtggttcagtaccaacccac
catgtaggagctgcactattgaaaggagagtggaaagatgctgtagacatgattcttgat
ccaagagaaactgaaaggcatgtagtaaatgatgcccgggaatattacaaagaaactggt
gacattgacgggactctaaggcaactaccgcgatacctcgttgctgaaagagccatactg
cagtgtctgaagaaatgccctggtaactacctgcaggctcttaaaggcattcccagaact
ttgagaatgatgtatgtacatagttatcaaagctacttatggaacaatgcagcaagtctg
cgcgtcaaaaattatggaaccagccaagttgtgttgggggacttggtaagtacaaaggta
gatgctgcaaaaagaatggtcgacagtcttacctctgagcacaacgaaagcagcgaagag
gcattggattgtgaccaggtagatgatactgctgttgtagatcttccagctgaaaggagt
gaccttgttaaggttgtaagtatagaggatttggaagctggaacttactcgaccagtgac
atcgtcctccctctacctggttcaagagtcatctacccgtctaatgacattgcagaaatt
tatcatgatttggcaaagaaggacggtatcagcctaactgagagcattcacggtgtaaag
gaattctcaataactagcatgactggtggttatagacgtgttttccagaaaccaatagac
tttgaatgggaattactgacttacactgacagcaataaaccattggcagagacggatctg
gacaggatacccatgaacaagccggtggagaaagttggatctactgaggaaattgaagat
gaatcaatgaaatctgatactaacccacatgattctggtgaaaccaatttgaaagaccag
acagatagcaatgaggctgaaaaagacactggaaatccagattctgagcagacacagatg
gcgcttaaaatggcactcactcttccatcttcttgttatgccacaatggcaatcagagaa
ctattaaagacgtcaacttctgttgcatatcacaagacacttaactag
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