Arabidopsis thaliana (thale cress): AT3G11960
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Entry
AT3G11960 CDS
T00041
Name
(RefSeq) Cleavage and polyadenylation specificity factor (CPSF) A subunit protein
KO
K12830
splicing factor 3B subunit 3
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
AT3G11960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ath03021
]
AT3G11960
03041 Spliceosome [BR:
ath03041
]
AT3G11960
03036 Chromosome and associated proteins [BR:
ath03036
]
AT3G11960
Transcription machinery [BR:
ath03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
AT3G11960
Spliceosome [BR:
ath03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
AT3G11960
Complex B
AT3G11960
Complex C
U2 SnRNP specific factors
AT3G11960
Chromosome and associated proteins [BR:
ath03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
AT3G11960
TFTC complex
AT3G11960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
820369
NCBI-ProteinID:
NP_001327782
TAIR:
AT3G11960
UniProt:
Q84R20
A0A5S9XBB9
LinkDB
All DBs
Position
3:3786314..3793728
Genome browser
AA seq
1379 aa
AA seq
DB search
MAAPEDESSAQSQSSPATAAPTPPPSSSPSSAGDHYLAKCILRPSVVLQVAYGYFRSPSS
RDIVFGKETCIELVVIGEDGIVESVCEQYVFGTIKDLAVIPQSSKLYSNSLQMGKDLLAV
LSDSGKLSFLSFSNEMHRFSPIQHVQLSTPGNSRIQLGRMLTIDSSGLFLAVSAYHDRFA
LFSLSTSSMGDIIHQRISYPSEDGGNGSSIQAISGTIWSMCFISKDFNESKEYAPILAIV
INRKGSLMNELALFRWNVKEESICLISEYVETGALAHSIVEVPHSSGFAFLFRIGDVLLM
DLRDPQNPCCLFRTSLDFVPASLMEEHFVEESCRVQDGDDEGCNVVVCALLELRDHEVRD
HDPMFIDTESDIGKLSSKNVSSWTWEPENNHNPRMIICLDNGDFFMFELIYEDDGVKVNL
SECLYKGLPCKDILWIEGGFLATFAEMADGTVFKLGTEKLHWMSSIQNIAPILDFSVMDD
QNEKRDQIFACCGVTPEGSLRIIRSGINVEKLLKTAPVYQGITGTWTVKMKLTDVYHSFL
VLSFVEETRVLSVGLSFKDVTDSVGFQSDVCTFACGLVADGLLVQIHQDAIRLCMPTMDA
HSDGIPVSSPFFSSWFPENVSISLGAVGQNLIVVSTSNPCFLSILGVKSVSSQCCEIYEI
QRVTLQYEVSCISVPQKHIGKKRSRDSSPDNFCKAAIPSAMEQGYTFLIGTHKPSVEVLS
FTEDGVGVRVLASGLVSLTNTMGTVISGCIPQDVRLVLVDQLYVLSGLRNGMLLRFEWAP
FSNSSGLNCPDYFSHCKEEMDTVVGKKDNLPVNLLLIATRRIGITPVFLVPFSDSLDSDI
IALSDRPWLLQTARQSLSYTSISFQPSTHATPVCSFECPQGILFVSENCLHLVEMVHSKR
RNAQKFQLGGTPRKVIYHSESKLLIVMRTDLYDTCTSDICCVDPLSGSVLSSYKLKPGET
GKSMELVRVGNEHVLVVGTSLSSGPAILPSGEAESTKGRVIILCLEHTQNSDSGSMTICS
KACSSSQRTSPFHDVVGYTTENLSSSSLCSSPDDYSYDGIKLDEAETWQLRLASSTTWPG
MVLAICPYLDHYFLASAGNAFYVCGFPNDSPERMKRFAVGRTRFMITSLRTYFTRIVVGD
CRDGVLFYSYHEESKKLHQIYCDPAQRLVADCFLMDANSVAVSDRKGSIAILSCKDHSDF
GMKHLEYSSPESNLNLNCAYYMGEIAMSIKKGCNIYKLPADDVLRSYGLSKSIDTADDTI
IAGTLLGSIFVFAPISSEEYELLEGVQAKLGIHPLTAPVLGNDHNEFRGRENPSQARKIL
DGDMLAQFLELTNRQQESVLSTPQPSPSTSKASSKQRSFPPLMLHQVVQLLERVHYALH
NT seq
4140 nt
NT seq
+upstream
nt +downstream
nt
atggcggctccggaggatgaatcttccgctcagtctcaatcatcacctgccacggcggct
cctacgcctcctccttcctcttccccttcctctgctggggatcactacctagctaagtgc
atcctccgccccagcgtcgttctccaggttgcttatggctacttccgctccccttcctcc
cgcgacatagttttcggcaaggagacctgcatagaattggtggttattggtgaagacggg
attgttgaatcggtgtgtgaacagtatgtatttggaacaattaaggatttggctgtcata
cctcagagtagcaagctttattcgaatagtttgcagatgggaaaagaccttctggctgtt
ctttctgattctggaaagctctcatttctctcatttagcaatgaaatgcacaggttctcg
ccaatacaacatgttcaactttctactccaggtaactcaaggattcaactcggaagaatg
ctcacaatagattccagtggtctctttcttgctgtcagtgcgtatcatgaccgttttgct
ctgttttccctctcaacatcgtctatgggtgatattattcatcagaggatttcttatcct
tctgaagacggagggaatggtagctctattcaagcaatatctggtactatttggagcatg
tgcttcatttctaaagattttaatgaatccaaggagtatgctcctattcttgccattgtt
ataaataggaaagggtccctcatgaatgagctggctttgtttagatggaatgtcaaagag
gaatccatatgtttaatatcagagtatgttgaaactggggctctggcacatagtattgtc
gaagttcctcactcctctggatttgcctttctgtttaggattggtgatgttctcttaatg
gatctaagagatcctcaaaacccttgctgtctgtttaggacatccttagattttgttcct
gcttcattaatggaagagcattttgttgaagagtcgtgtagagtacaagatggagacgat
gagggctgtaatgttgttgtatgtgctttgttagagctcagggatcatgaggtcagggat
catgatcccatgttcatagatactgaaagtgacattggaaagttgagttctaagaacgtc
tcttcatggacttgggagccggaaaataatcataatcctcggatgattatttgcttagat
aatggtgattttttcatgtttgaactcatatatgaagatgatggggttaaagtaaatcta
tcagagtgtttatacaaaggtttaccatgcaaggatattttatggatcgaaggtggattc
cttgctacatttgcagaaatggcagatggaacggttttcaaattgggaactgagaagcta
cattggatgagttccatacaaaatattgctccgatcttggatttttcggttatggatgac
cagaatgaaaaacgagaccaaatatttgcttgttgtggtgtaacccctgaaggctctctg
agaattattcgtagtggcattaatgtagaaaaacttctgaaaaccgcgcctgtttatcaa
ggaataactggtacttggactgttaaaatgaagcttactgatgtataccattcatttctt
gttttgtcatttgttgaggagaccagggttttatcagttggattaagttttaaagatgtc
actgattcagttggtttccagtctgatgtttgcaccttcgcatgtgggcttgttgctgat
ggtttgttggttcagattcatcaagatgcaattaggctgtgcatgcctacaatggatgct
cattctgatggtattcctgtttcttcaccatttttctcatcgtggtttccagaaaatgtc
agtatcagcttgggggcagttggtcaaaatttgatagttgtctctacgtctaacccttgt
ttcttgtctattcttggggtcaaatcagtatcatctcaatgctgtgaaatctatgaaatt
caacgagtaacattgcagtatgaagtttcctgcatctcagttcctcaaaaacatattgga
aaaaagagatcccgtgattcttccccggataatttttgcaaagctgcgattccttctgct
atggagcaaggctatacatttttgattggcacacataagccttctgttgaggtcctttcc
ttcacagaagatggtgttggtgttcgagtccttgcttctgggttggtatcgctaacaaat
acaatgggaactgttattagtgggtgcattcctcaagatgtaagactcgtgttagttgat
caactttatgtcctttctgggttgagaaatgggatgcttctccgttttgagtgggcccct
ttttcaaattcatccgggttgaattgtccagattattttagtcactgtaaagaggagatg
gacactgttgtgggcaaaaaagacaatttaccagtcaaccttctgttaattgctacccga
cgcattggcatcacacctgttttcttggttccgttcagtgattcactggattcagacatc
atagctcttagtgacaggccatggttgttacaaacagctcgacaaagcctttcctatact
tccatctcattccaaccttctactcatgcaactcctgtatgctcgtttgaatgcccccaa
ggaattctttttgtttcagagaactgtttacatctggtggagatggtgcacagcaaacgg
cgtaatgcgcaaaagtttcagcttggaggcaccccgcgaaaggttatctaccacagtgaa
agcaaattattgattgtgatgagaactgatctgtatgatacatgtacgtctgatatatgc
tgtgtagacccgctcagtgggtcagtgttatcatcctacaagctcaaacctggagagact
ggaaagtcaatggagcttgtacgtgtgggaaatgaacatgtccttgtggttgggacgagt
ttgtcttctggtcctgctatactacccagtggtgaagctgaaagtacaaaaggacgagta
atcatcctctgcttagaacacactcaaaactcggatagtggttcaatgacaatttgttca
aaggcttgttcgtcttcccaacgtacatcacctttccatgatgttgtgggatacacaaca
gaaaacctatcaagcagtagcctctgcagcagtccagatgattacagctatgatggaatc
aaacttgatgaagctgaaacatggcagttaagattggcctcttcaaccacttggccgggt
atggtacttgcaatctgtccataccttgatcattacttcctggcatctgccggcaatgct
ttctatgtctgtggttttccgaacgatagtcctgagagaatgaagaggtttgcggtagga
aggacccgtttcatgataacatctctgcgcacatacttcactagaattgttgttggggat
tgccgtgatggtgttctattttattcttatcacgaggaatcaaagaaacttcaccaaata
tattgtgatccagcgcagaggttagttgctgactgttttctaatggatgctaattccgtt
gctgtatctgatcgcaaggggagtatagcaatcctgtcttgcaaagatcattcagacttt
ggtatgaagcaccttgaatattcaagtccggagtccaacctgaatctaaactgtgcttat
tacatgggagagattgccatgtctataaaaaagggttgcaacatctacaaacttccagct
gatgatgtactgcgaagttatggtcttagtaaaagtattgacacagctgatgacactatc
atagcaggcacgctattgggaagtatatttgtgtttgctcctatttcaagcgaggaatat
gagctcttagaaggtgtccaagcaaagcttgggatccatcccctgactgctcctgtactt
ggtaatgatcataatgagttccgaggtcgagagaatccgtcccaagcgagaaagatattg
gatggtgacatgcttgctcagttcttggagcttacaaatagacagcaggagtcagtttta
tcgacacctcagccatcaccaagcacatcaaaagcaagttcaaagcaacgttctttcccg
cctctcatgctacaccaagttgtacagttgcttgagcgtgtccattacgctttgcactag
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