Arabidopsis thaliana (thale cress): AT3G11964
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Entry
AT3G11964 CDS
T00041
Name
(RefSeq) RIBOSOMAL RNA PROCESSING 5
KO
K14792
rRNA biogenesis protein RRP5
Organism
ath
Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ath03009
]
AT3G11964
Ribosome biogenesis [BR:
ath03009
]
Eukaryotic type
90S particles
Other 90S particles
AT3G11964
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
OB_RRP5_4th
OB_RRP5
Spt6_S1
Suf
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_C
ARM_TT21_N
NRDE-2
Beta-prop_NUP159_NUP214
Motif
Other DBs
NCBI-GeneID:
820370
NCBI-ProteinID:
NP_001326789
TAIR:
AT3G11964
UniProt:
F4J8K6
LinkDB
All DBs
Position
3:complement(3793731..3806743)
Genome browser
AA seq
1920 aa
AA seq
DB search
MVVPQKKFANGKRNDSTKSFKPMKKPFKKTKDDVAARSEAMALQLEDVPDFPRGGGTSLS
KKEREKLYEEVDAEFDADERVSKKSKGGKSKKRIPSDLDDLGLLFGGGLHGKRPRYANKI
TTKNISPGMKLLGVVTEVNQKDIVISLPGGLRGLVRASEVSDFTDRGIEDDENELLGDIF
SVGQLVPCIVLELDDDKKEAGKRKIWLSLRLSLLHKGFSFDSFQLGMVFSANVKSIEDHG
SILHFGLPSITGFIEISDDGNQESGMKTGQLIQGVVTKIDRDRKIVHLSSDPDSVAKCLT
KDLSGMSFDLLIPGMMVNARVQSVLENGILFDFLTYFNGTVDLFHLKNPLSNKSWKDEYN
QNKTVNARILFIDPSSRAVGLTLSPHVVCNKAPPLHVFSGDIFDEAKVVRIDKSGLLLEL
PSKPTPTPAYVSTYDAAGDEVTKLEKKFKEGNHIRVRVLGLKQMEGLAVGTLKESAFEGP
VFTHSDVKPGMVTKAKVISVDTFGAIVQFSGGLKAMCPLRHMSEFEVTKPRKKFKVGAEL
VFRVLGCKSKRITVTYKKTLVKSKLPILSSYTDATEGLVTHGWITKIEKHGCFVRFYNGV
QGFVPRFELGLEPGSDPDSVFHVGEVVKCRVTSAVHGTQRITLSFMIKPSSVSEDDSIKL
GSIVSGIIDTITSQAVIVRVKSKSVVKGTISAEHLADHHEQAKLIMSLLRPGYELDKLLV
LDIEGNNMALSSKYSLIKLAEELPSDFNQLQPNSVVHGYVCNLIENGCFVRFLGRLTGFA
PRSKAIDDPKADVSESFFVGQSVRANIVDVNQEKSRITLSLKQSSCASVDASFVQEYFLM
DEKISDLQSSDITKSDCSWVEKFSIGSLIKGTIQEQNDLGVVVNFDNINNVLGFIPQHHM
GGATLVPGSVVNAVVLDISRAERLVDLSLRPELLNNLTKEVSNSSKKKRKRGISKELEVH
QRVSAVVEIVKEQHLVLSIPEHGYTIGYASVSDYNTQKLPVKQFSTGQSVVASVKAVQNP
LTSGRLLLLLDSVSGTSETSRSKRAKKKSSCEVGSVVHAEITEIKPFELRVNFGNSFRGR
IHITEVNDASTSDEPFAKFRVGQSISARVVAKPCHTDIKKTQLWELSVKPAMLKDSSEFN
DTQESEQLEFAAGQCVIGYVYKVDKEWVWLAVSRNVTARIFILDTSCKAHELEEFERRFP
IGKAVSGYVLTYNKEKKTLRLVQRPLLFIHKSIANGGGSKTDKPDSSIPGDDDTLFIHEG
DILGGRISKILPGVGGLRVQLGPYVFGRVHFTEINDSWVPDPLDGFREGQFVKCKVLEIS
SSSKGTWQIELSLRTSLDGMSSADHLSEDLKNNDNVCKRFERIEDLSPDMGVQGYVKNTM
SKGCFIILSRTVEAKVRLSNLCDTFVKEPEKEFPVGKLVTGRVLNVEPLSKRIEVTLKTV
NAGGRPKSESYDLKKLHVGDMISGRIRRVEPFGLFIDIDQTGMVGLCHISQLSDDRMENV
QARYKAGESVRAKILKLDEEKKRISLGMKSSYLMNGDDDKAQPLSEDNTSMECDPINDPK
SEVLAAVDDFGFQETSGGTSLVLAQVESRASIPPLEVDLDDIEETDFDSSQNQEKLLGAN
KDEKSKRREKQKDKEEREKKIQAAEGRLLEHHAPENADEFEKLVRSSPNSSFVWIKYMAF
MLSLADIEKARSIAERALRTINIREEEEKLNIWVAYFNLENEHGNPPEESVKKVFERARQ
YCDPKKVYLALLGVYERTEQYKLADKLLDEMIKKFKQSCKIWLRKIQSSLKQNEEAIQSV
VNRALLCLPRHKHIKFISQTAILEFKCGVADRGRSLFEGVLREYPKRTDLWSVYLDQEIR
LGEDDVIRSLFERAISLSLPPKKMKFLFKKFLEYEKSVGDEERVEYVKQRAMEYANSTLA
NT seq
5763 nt
NT seq
+upstream
nt +downstream
nt
atggttgtaccgcagaagaaatttgctaatggaaaacgtaatgattctacaaagtccttt
aaaccaatgaagaaaccgtttaagaagaccaaggacgatgtagctgctaggtctgaagcc
atggctcttcagctcgaagatgttcccgactttcctcgaggtggaggtacttctctgagt
aaaaaagagcgtgagaaactttatgaagaagtcgatgctgagtttgacgctgatgagcgt
gtttctaagaagagtaaagggggtaagtctaaaaagagaatccctagcgatttagacgac
ttgggtttgctttttggcggcggccttcatggaaaacggccaagatatgccaataagatt
accactaagaatatttccccaggaatgaaacttttgggagttgttactgaagtaaaccag
aaggatattgtaattagtcttccagggggcttacgcggattagttcgtgcaagcgaggta
tcagattttacagatcgtgggattgaggacgatgaaaatgaactccttggagacattttt
tctgtgggtcagcttgttccctgcattgtattggagttagatgatgataagaaggaggcg
ggcaaaaggaaaatatggctttcattgcgactttctttgttgcacaagggattcagtttt
gattcctttcaactagggatggtgttctctgcaaacgtgaaaagcatcgaagaccatggt
tctatccttcattttggattaccttctatcacaggatttatcgaaataagcgacgatgga
aaccaggagtcaggaatgaagactgggcagcttattcagggtgtggttacaaagatcgat
agagaccgtaaaattgttcatcttagttctgacccagattcagtggcaaagtgtctgacc
aaggatcttagtggcatgtcgtttgatcttctcatcccaggaatgatggttaatgctcgc
gtgcaatcagtcctcgagaatgggatactgtttgattttcttacgtactttaatggaacg
gttgatctcttccacctaaaaaatccattatctaacaaaagctggaaagatgagtataat
cagaataagacggttaatgctagaatattgtttatcgatccatcatctcgagctgttggt
ttgacattgagccctcatgttgtttgtaacaaggctcctccattgcatgtctttagcgga
gacatattcgacgaagcaaaagtagttcgtattgataaatcaggccttcttctggaactt
ccctctaagcccacaccaactccagcatacgttagcacatatgatgccgccggagatgaa
gtaacgaaactggaaaagaagtttaaggaaggaaatcacatccgtgttcgagtactcggc
cttaagcagatggaggggttggccgtagggactttaaaggaaagcgcctttgaaggtcca
gttttcacccactctgatgtcaagcctggtatggtgacaaaggcaaaagtcatatctgtt
gatacatttggtgccattgtccaattttcgggtggtctcaaagcaatgtgcccacttcgg
catatgtctgagtttgaagttacgaagcctaggaaaaagttcaaggttggagctgaatta
gtattccgtgtgcttggctgcaaatcaaagagaataactgttacctacaaaaaaacactt
gtgaagtctaaacttccaattttgagttcttacactgatgcaactgaagggctagtgacg
catggctggataacaaagatcgaaaagcatggatgctttgttcgcttctataatggagtg
caaggatttgttcccagatttgaacttggtttagagcctggaagtgatccagattcagtg
tttcatgttggggaggttgtcaaatgtagagtaactagtgcagttcatggtacccaaagg
atcacccttagtttcatgataaagccatcaagtgtttctgaagacgattcgatcaagtta
ggtagcattgtatcagggataattgatactataactagtcaggcagtcattgtccgtgtt
aaatccaaaagtgttgtcaagggtacaatttctgctgaacatttagctgatcatcatgag
caagcaaaattaataatgtcacttttaagacctggatatgagcttgataagctgctggta
ctagacattgaaggcaacaatatggctctctcttcaaaatattctctcattaagttagct
gaagagcttccttcggattttaatcagctccagccaaactcagtggttcatggttatgtt
tgtaacttgattgaaaatggctgttttgtccgttttcttggtcggttgactggtttcgcc
ccaagaagcaaggcaattgacgaccccaaggcagatgtgtcagaatccttctttgttgga
caatcagttcgggctaatatagttgatgtcaatcaagaaaaaagtaggataactctttca
ttgaaacagtcatcttgcgcatctgtagatgcttcttttgtccaagagtacttcctcatg
gatgagaagatatcggacctgcaatcatctgatattactaaaagtgactgtagctgggtt
gagaaattctcaattgggagtttgatcaagggaaccatacaggaacaaaatgatcttggt
gtggtggtgaattttgacaatattaataacgtccttggttttatacctcagcatcatatg
ggtggagctactttggtacccggttctgttgtcaatgcagttgttcttgatatatctagg
gcagagagactagttgatttgtctttgaggcctgagctcttgaacaacttaaccaaagag
gtgtccaacagttcaaaaaagaaacgtaaaagaggaatctccaaggaacttgaagtccac
cagagggtcagtgctgttgtagagattgtgaaggagcaacacttggttttgtcgattcca
gagcatggttacactataggatatgcatcagtatcagactataacactcagaagttgcca
gtgaaacaattttccactggacaaagtgttgttgcttctgttaaggctgtgcaaaaccct
ttaacgtctgggaggttgcttttacttcttgactctgtttccggcacttctgagacttcc
cgttctaagagggcaaagaagaaatccagctgtgaagttggttctgttgtccacgccgag
attactgaaataaagccttttgaacttagagtaaactttggcaacagtttccgagggaga
atccacataactgaggtaaatgatgcgagtacaagtgatgaaccttttgccaaattcaga
gttgggcaatcaatttctgcaagggttgttgcaaagccgtgtcatactgatattaaaaag
actcaactttgggagctttctgtaaagcctgcaatgcttaaagattccagtgagtttaat
gacacacaagagagtgaacaacttgagtttgctgctggacaatgtgtcattggatatgtc
tacaaagtggataaggaatgggtttggttagcagtatctcgcaacgtgacagcacgcata
ttcatattagacacatcatgcaaagctcatgaacttgaagagtttgaaaggcgttttccc
atcggtaaagctgtttcaggctatgttttgacgtacaataaagagaaaaaaacattacgg
ttggttcagcgtccactactgtttatccacaaaagcattgccaatggtggaggcagcaaa
acggataaaccagacagtagcattcctggtgatgatgatactctatttattcatgaagga
gacattctgggtggaagaatttctaagatacttcctggtgttggtggacttcgtgtgcaa
ttaggtccttatgtattcgggagagttcattttactgaaatcaatgattcatgggtccct
gatccattagatggttttcgtgaaggccagtttgtcaaatgtaaggtcttagaaatcagc
agttctagtaaagggacttggcaaattgaactgtcattacggacctcactagatggcatg
agttctgctgaccatctctcagaagatttgaagaataatgataatgtttgtaagcgtttt
gagaggattgaagatctttcgcctgatatgggcgtccagggttatgtcaaaaatacgatg
tcgaaaggttgttttattatactttcaaggacagtggaggcaaaagttcgactgtcaaat
ttatgtgatacgtttgttaaggaacccgaaaaggaatttccagtaggaaaacttgtgact
ggcagggttttaaatgtggagcctttatccaagcggatagaagtcactttgaagacagta
aatgctggtgggcggccaaaatctgaatcttatgacttgaagaaactccatgttggagat
atgatttctgggagaatcagacgtgtggagccctttggcttattcattgacattgatcaa
actggcatggttggattatgtcacatatcacagctttctgatgatcgtatggagaatgta
caagccagatataaggctggggagagcgtccgcgcaaagattttgaagctggacgaggaa
aagaagcgtatatcactcggaatgaagagttcctatcttatgaatggtgatgatgacaag
gcacaaccactttccgaagacaacacaagcatggaatgtgatccaatcaatgatccgaag
tcggaagttcttgcagcagtcgatgattttgggttccaggaaacaagcggtggaacttct
ctggttcttgcccaagtagaatcaagggcttctatccctccgcttgaggttgaccttgat
gacattgaggagacggactttgacagcagccagaatcaggagaaactactgggagccaat
aaagatgaaaagagcaagagaagggaaaagcaaaaagacaaagaggaaagagagaagaaa
atacaagctgctgaaggaagattgctggagcatcatgcacctgagaatgctgatgaattt
gagaaattggttagaagctctccaaacagcagctttgtctggataaaatatatggcgttc
atgctcagcttggctgatattgagaaagccaggtctattgctgagagggccttgaggact
ataaatattcgtgaggaagaagagaagctaaacatatgggttgcttacttcaatttggaa
aatgaacatggaaatccaccagaggaatctgttaagaaagtgtttgaaagggcccgtcaa
tactgtgacccaaagaaagtttacctcgcactcttgggcgtgtacgagagaacagagcaa
tataaattggctgataagctgcttgatgagatgattaaaaagttcaagcaatcttgcaag
atttggttaaggaaaatacaaagttctctgaaacaaaacgaggaagccatacaatccgtt
gtgaatcgtgccttgctatgtcttccccgccataagcacataaagttcatatcacagact
gccatccttgagttcaaatgtggagttgcggatagagggagatcactgtttgaaggtgtt
cttagggaatacccaaaaagaacagacttgtggagcgtttatcttgaccaagagatccgg
cttggagaagatgatgtaattagatctttattcgagagagccattagcttgagcttgccc
cccaagaagatgaagtttttgttcaagaagttcttggaatatgagaaatctgttggtgac
gaggagagagtcgaatacgtgaaacagagggcgatggagtatgcaaacagtaccttggcc
tga
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