Arabidopsis thaliana (thale cress): AT3G12990
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Entry
AT3G12990 CDS
T00041
Symbol
RRP45a
Name
(RefSeq) ribonuclease PH45A
KO
K03678
exosome complex component RRP45
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AT3G12990 (RRP45a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT3G12990 (RRP45a)
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
AT3G12990 (RRP45a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
G_glu_transpept
Motif
Other DBs
NCBI-GeneID:
820485
NCBI-ProteinID:
NP_566441
TAIR:
AT3G12990
UniProt:
Q9LDM2
A0A5S9XCZ7
LinkDB
All DBs
Position
3:4156054..4158004
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AA seq
307 aa
AA seq
DB search
MEGRLNNMWRLTVNESKFVESALQSELRVDGRGLYDYRKLTIKFGKEYGSSQVQLGQTHV
MAFVTAQLVQPYKDRPSEGSFSIFTEFSPMADPSFEPGHPGESAVELGRIIDRALRESRA
VDTESLCVLAGKLVWSVRIDLHILDNGGNLVDAANVAALAALMTFRRPDCTVGGDNSQDV
IIHPPEEREPLPLIIHHLPIAFTFGFFNKGSILVMDPTYVEEAVMCGRMTVTVNANGDIC
AIQKPGEEGVNQSVILHCLRLASSRASATTKIIRDAVEAYNRERSSQKVKRHHTLAKSEV
LGPIVVV
NT seq
924 nt
NT seq
+upstream
nt +downstream
nt
atggaggggaggttgaataatatgtggaggttgactgtgaatgagagcaaattcgttgaa
tctgcgttgcaatctgagctcagagtcgatggtcgtggcctttatgattaccgcaagctt
actattaagtttggcaaggaatatggcagctcacaagttcaactgggtcagactcatgta
atggcttttgtgactgctcagctagtacaaccttacaaagacagacctagtgaaggctcc
ttctctatcttcaccgagttttctccaatggctgatccatcgtttgagccagggcatcct
ggtgaatctgctgttgagcttggccgtattatagaccgtgctctacgagaaagccgtgca
gtagatacagagtcgctttgtgttctagccggaaagctggtttggtctgttcgcattgat
cttcacattttggacaatggagggaacttggttgatgctgctaatgttgctgccttagcc
gcactcatgactttcaggagacctgattgcactgtaggaggggacaacagtcaagacgtg
atcatacatccacccgaagaaagggaaccacttcctttgataatacatcatctcccaata
gccttcacgtttggattttttaataaaggcagtatcttggtgatggacccaacttacgtt
gaagaagctgttatgtgtgggagaatgactgtgacagtcaatgccaatggcgatatatgc
gcaatccaaaaaccaggagaagaaggcgtgaaccagagtgtaatccttcattgcctgcgt
cttgcttcttcaagagcttctgcaacaacaaagataattagagatgcagttgaagcatac
aaccgtgagaggagctcacagaaggtgaagcggcatcatactttggctaagtctgaagtt
ttgggacctattgtagttgtgtag
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