Arabidopsis thaliana (thale cress): AT3G13300
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Entry
AT3G13300 CDS
T00041
Symbol
VCS
Name
(RefSeq) Transducin/WD40 repeat-like superfamily protein
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AT3G13300 (VCS)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT3G13300 (VCS)
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
AT3G13300 (VCS)
mRNA degradation factors
5'-3' decay
Decapping complex
AT3G13300 (VCS)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR75_2nd
Beta-prop_EML_2
COG4_C
Beta-prop_TEP1_C
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
820530
NCBI-ProteinID:
NP_187938
TAIR:
AT3G13300
UniProt:
Q9LTT8
LinkDB
All DBs
Position
3:4303822..4310275
Genome browser
AA seq
1344 aa
AA seq
DB search
MASSPGNTNPHNTPPFDLGILFKPSSNPYPPPAASYPPPTGPFLHNQYDQQHYAPPGISA
QPSPVTQQQQDVSSSSAATNLHPQRTLSYPTPPLNLQSPRSNHNPGTHILALLNNTNNGA
PVANQEPSHQLPVVNHNEIARSFPGGSGPIRVPSCKLPKGRRLIGEHAVYDVDVRLQGEI
QPQLEVTPITKYGSDPQLVVGRQIAVNKVYICYGLKGGNIRVLNINTALRSLFRGHSQRV
TDMAFFAEDVDMLASVSLDGKVFVWKISEGSEGEDQPQITGKIVLALQILGEEDTKHPRV
CWHCHKQEILVVSIGKHVLRIDTTKVGRGEVFSAEAPLQCPLDKLIDGVQIVGKHDGEVT
DLSMCQWMTTRLVSSSVDGTIKIWQDRKAQPLVVLRPHDGHPVSSATFVTSPERPDHIIL
ITGGPLNREMKIWVSAGEEGWLLPADAESWRCTQTLDLKSSTEPRAEEAFFNQVIALSEA
GLLLLANAKRNALYAVHLDYGSSPVGTRMDYLSEFTVTMPILSFIGTNDPPEEPIVKVYC
VQTLAIQQYTLDLCLCLPPPIENMGLEKSDSSVSREANLVEGMSEPSGLKPTDLPSVDSV
PKPSIIVNRSESANKLSFPSAEATSQAIVPPNGEPKTSGLPSQTSGAGSAYATLPQLPLS
PRLSSKLSGYHTPVEAIEPVIPHHELGGKTPSADYSVDRQMDAVGERNLDVSSVEEISRS
KDSNVTPDDDVSGMRSPSAFFKHPTHLVTPSEILMGVSSAEASITTEDRRDRDANIQDVN
NDPRDTEVEVKEISEARSTQNGEINDHDETENCTSENREKVFCSQVSNLSTEMARDCYPS
TEGTFIPGESKAYGQPIKAGDESGVDSRGGPAKLLKGKKQKAKNSQGPGLSSTSSNVANL
ADSFNEQSQSLSHPMTDLLPQLLAMQETMNQVMASQKEMQRQLSNAATGPIGKESKRLEV
ALGRMIEKSSKSNADALWARIQEETVKNEKALRDHAQQIVNATTNFMSKELNAMFEKTIK
KELAAIGPALARSVVPVIEKTVSSAITESFQRGIGDKAVNQLDKSVNIKLEATVARQIQA
QFQTSGKQALQEGLRSSVESSVIPSFEKACKAMFDQIDSAFQKGIAEHTNAAQQRFDSGH
SQLAHTLKESITSASSVAQALSRELAETQRNLLALAAAGANSGGSNSLVTQLSGGPLGAL
LEKVEAPMDPTTELSRLISERKYEESFTSALQRSDVSIVSWLCSQVDLRGLLAMNPLPLS
QGVLLSLLQQLACDISKDTSRKLAWMTDVVAAINPSDQMIAVHARPIFEQVYQILHHHRN
APGSDVSAIRLIMHVINSMLMGCK
NT seq
4035 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcttctcctggtaatactaaccctcacaatactcctccgtttgatctcggtatt
ctcttcaaaccttcatccaatccttatccgccaccggcggcatcttatcctccgcctaca
ggtccttttcttcacaaccagtacgatcagcagcactacgctccgcctggtatctccgct
caaccatctccggtgactcagcagcaacaggatgtgtcttcctcttccgccgcgactaac
ttgcatcctcagagaacgctgtcttatcccacgccacctctcaatctacaatccccccgt
tccaatcacaatcccggtacgcacatcctcgctctccttaacaataccaacaacggagcc
cccgtggctaaccaagagccgtcgcatcagctcccagtagtcaatcacaacgagatcgct
cgctcttttcccggcggttcaggtcctattcgtgtaccgagctgtaaattgcccaaggga
aggcgattgattggtgaacacgctgtgtacgatgttgatgtgagattacaaggtgagatt
cagccgcagctggaggtgactccgattaccaaatacgggtcggatcctcagctcgtagtg
ggtaggcaaatcgccgtgaataaggtttacatttgctatggattgaaaggaggaaacatt
agggttctcaatatcaacacagcattgaggtctctgttccgtggccattcacagagagtg
acggatatggctttctttgccgaggatgttgatatgttggccagtgttagcctagatgga
aaagtttttgtgtggaaaatttctgaagggtctgagggagaggatcagccccaaataact
gggaagatagtacttgctcttcagatactaggagaggaagacaccaaacatccacgcgtt
tgttggcactgccacaaacaggaaattttggtagtttcaattggtaaacatgtactgcgt
attgatactacaaaagttggcagaggtgaagtattctctgctgaggctcctctccagtgt
ccccttgataagctgatcgatggtgttcagattgttggtaagcatgatggagaagtgaca
gatttgtcaatgtgccaatggatgaccacgcgtctggtttcttcttcagttgatggcacg
attaagatatggcaagatcgtaaggcacaaccacttgtagttttgaggcctcatgatgga
catccagtcagttcagccacgtttgtgacatctcctgagagacctgatcacatcatactt
atcacggggggtcctctaaatcgagaaatgaaaatctgggtctctgctggggaagaaggg
tggcttttaccagctgatgctgaatcatggaggtgtacccagactcttgacttgaaaagt
tcaaccgagccacgagctgaagaggcattttttaaccaagtcatagcattatctgaagca
ggcttgcttttacttgcaaatgcaaaaaggaacgccttatatgctgtgcatttggactat
ggttcttctccagttggtacgcggatggattacctatcagagtttacagtcactatgccc
atattgagtttcattgggacaaatgatcctccagaagaacccattgttaaggtttattgt
gttcagactctagcaatccagcagtatacattagacttgtgcttatgcttgccaccacct
atagaaaatatgggtttggagaagtcagattctagtgtatcacgagaggcaaatcttgtt
gaaggcatgtcagaaccatctggacttaaacctactgacttaccttcagttgattcagtg
ccaaaaccttcgattatagtgaatagatcagaaagtgctaataagttgagttttccatca
gcggaagccacatcacaagcaattgttccacccaacggtgaacctaaaacttctggcctg
ccatctcaaaccagtggtgcaggttctgcgtatgctactttaccccaacttcctctcagt
cccagactatcaagtaaactttctggctatcacactcctgtagaggcgattgagccagta
atacctcatcatgagcttggtggcaaaacaccttctgctgattactctgttgataggcaa
atggatgctgttggagaaagaaatttggacgtgtcatccgtagaagaaatctcaagaagc
aaggactcaaatgttacgcctgatgatgatgtgtctgggatgcgaagcccatcagctttt
ttcaaacaccccactcatcttgtaactccttcagagatattgatgggcgtttcttccgct
gaagcctccattactactgaagacaggagagatagggatgcaaatattcaggacgtgaat
aatgatccaagagacaccgaagtagaggtgaaagaaataagtgaagcaaggtcaacacag
aatggtgaaatcaatgatcatgacgaaactgagaattgcacttcagaaaatagagaaaaa
gtcttctgctcacaggtttcaaatctcagcactgagatggcaagagactgttatcctagt
actgagggaactttcattccaggggaatctaaggcatatggacaacctataaaggctgga
gatgaaagtggtgttgactcgagaggtgggcctgcaaagcttcttaaaggaaagaagcag
aaggccaaaaattcacagggtcccggtttgtcatctacatcctcaaatgttgctaatctg
gctgactccttcaatgagcaaagtcagagtttaagtcatcccatgacagatttacttcct
cagttgttagcaatgcaagaaacgatgaatcaggtgatggcttcgcagaaggagatgcag
agacaactatcaaatgctgccactggccctatcggaaaagaaagtaaaagactagaagtt
gcgttagggagaatgattgagaaatccagcaagtcaaatgctgatgctctatgggcccgc
atccaggaggagactgttaagaatgaaaaggcattacgtgaccatgcccagcaaattgtg
aatgcaacgacaaacttcatgagcaaggagttaaatgccatgtttgagaaaacgataaag
aaagaattggctgcaattggtccagccctagcacgttcagtagtaccagttattgaaaaa
actgtatcttctgcaatcacagagtcctttcagagaggaataggtgacaaagcagttaat
cagcttgacaaatctgttaatataaagcttgaagcaaccgtagctaggcaaattcaagcc
caatttcagacctctggcaagcaagccctccaggaaggtcttaggtcaagtgtggagtcc
tcagtcataccttcctttgagaaggcatgcaaggccatgtttgaccaaatagactcagcc
ttccagaaaggtattgctgagcatacaaatgcagcccagcaacggtttgactctggacac
tcccagcttgctcatactctaaaggaatcaattacttctgcgtcgtcagttgctcaagcc
ttaagtcgtgagttagccgagacccaaaggaatctcttagctctcgcagctgctggagca
aattctggtgggtctaattccttggttactcaactaagtggcggacctttgggtgctctt
cttgaaaaggttgaagcacctatggacccaacaacagaactatcgaggttgatatctgaa
cggaagtacgaagaatctttcacttcggccctacagagaagcgatgtctctatagtatca
tggctttgctcacaggtggatctacgtggattactggcgatgaatccgcttccactgagc
caaggcgtgcttctttcactgctgcagcagctagcctgtgacattagcaaggacacatcc
cgtaagctggcttggatgactgatgtggttgcagccataaacccatcagaccagatgatt
gcggtccacgctcggccaatctttgaacaggtatatcagattctgcaccatcaccgcaac
gcaccgggaagcgatgtctcagccatcagactgataatgcacgtgatcaactccatgctt
atgggttgcaaatga
DBGET
integrated database retrieval system
