Arabidopsis thaliana (thale cress): AT3G15980
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Entry
AT3G15980 CDS
T00041
Name
(RefSeq) Coatomer, beta' subunit
KO
K17302
coatomer subunit beta'
Organism
ath
Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ath04131
]
AT3G15980
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ath04147
]
AT3G15980
Membrane trafficking [BR:
ath04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
AT3G15980
Exosome [BR:
ath04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
AT3G15980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
B-prop_COPA_B_2nd
TPR_COPA_B
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_EML
Beta-prop_TEP1_2nd
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_HPS5
Beta-prop_DCAF4
PEP5_VPS11_N
Beta-prop_Nup120_160
Beta-prop_IFT122_1st
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Beta-prop_SPT8
WD_LRWD1
TPR_CcmH_CycH
TPR_GEMI5
Motif
Other DBs
NCBI-GeneID:
820842
NCBI-ProteinID:
NP_850592
TAIR:
AT3G15980
UniProt:
Q8L828
LinkDB
All DBs
Position
3:complement(5411278..5418632)
Genome browser
AA seq
909 aa
AA seq
DB search
MPLRLDIKRKFAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQTQTITKSFEVTELPV
RSAKFIPRKQWVVAGADDMYIRVYNYNTMDKVKVFEAHSDYIRCVAVHPTLPYVLSSSDD
MLIKLWDWENGWACTQIFEGHSHYVMQVVFNPKDTNTFASASLDRTIKIWNLGSPDPNFT
LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPE
LPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYIKSSRRVVIGYDEGTIMVKLG
REIPVASMDSSGKIIWAKHNEIQTANIKSIGAGYEATDGERLPLSVKELGTCDLYPQSLK
HNPNGRFVVVCGDGEYIIYTALAWRNRSFGSGLEFVWSSEGECAVRESSSKIKIFSKNFQ
ERKSIRPTFSAEKIFGGTLLAMCSNDFICFYDWAECRLIQQIDVTVKNLYWAESGDLVAI
ASDTSFYILKYNRELVSSHFDSGRPTDEEGVEDAFEVLHENDERVRTGIWVGDCFIYNNS
SWKLNYCVGGEVTTMYHLDRPMYLLGYIANQSRVYLVDKEFNVIGYTLLLSLIEYKTLVM
RGDLDRANQILPTIPKEQHNNVAHFLESRGMIEDALEIATDPDYKFDLAIQLGRLEIAKE
IAEEVQSESKWKQLGELAMSSGKLQLAEDCMKYAMDLSGLLLLYSSLGDAEGVSKLACLA
KEQGKNNVAFLCLFTLGRLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVALWREDLSK
VNPKAAESLADPEEYSNLFEDWQVALSVEANTAETRGVYTAAENYPSHADKPSITLVEAF
RNLQVEAEESLENGNIDHEVAEENGHVENEGDEEEQQEEEVNEEEGVVDADSTDGAVLVN
GSEVLTPHP
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atgcctctcagactagatatcaagagaaagtttgctcaacgatcagagagagtcaaatct
gttgatctgcatcctactgaaccatggattctagcaagtttgtattctggaaccgtgtgt
atttggaactaccagacacagacgattacaaaatccttcgaggtgacggaattgccagtt
aggtcggccaagtttattccgcgcaagcaatgggttgtggctggagcggatgatatgtac
atccgtgtatacaattacaatacaatggacaaggtcaaagtatttgaggctcattcggat
tacattaggtgtgtagctgtccatccgacccttccatatgtgctgtcatcttctgatgat
atgctcataaagctttgggactgggaaaacggttgggcttgtactcagatatttgaggga
cattcgcactatgtgatgcaagtggtatttaatccaaaagataccaacacttttgccagt
gcttcgcttgatcgtaccataaagatatggaatcttggttccccagacccaaattttaca
ctggatgctcatcagaaaggagtcaactgtgtagattatttcacagggggtgataaaccc
tatctaattaccggctctgatgatcatactgctaaggtatgggactatcaaaccaaaagt
tgtgtccagacgctagatgggcacacacacaatgtttctgccgtatgtttccatccagag
cttccaataataatcacaggttctgaggatggcactgttcgcatttggcacgccactacc
tacaggctagaaaacacattaaattatggtctcgagagagtttgggccattggttacatc
aaaagttctcggcgggttgtgattggatatgatgaaggaaccatcatggttaaacttgga
cgagaaattcctgtcgctagcatggacagtagcggaaaaatcatatgggctaagcataat
gaaattcaaaccgcaaacatcaaaagtattggtgcaggttacgaggctactgatggagaa
agacttcccttgtctgttaaagagttggggacctgtgatctttatccacaaagcttgaag
cacaaccctaatgggaggtttgtcgtagtctgcggtgatggagagtacataatctacact
gctttggcgtggagaaatagatcttttgggtctggcctggaatttgtttggtcatctgag
ggggaatgtgcggttagagaaagctcatcaaagataaagatattcagtaaaaatttccag
gaaaggaagagtatccggcctactttctcagctgagaagatttttggaggaaccttgtta
gcaatgtgttcgaatgatttcatctgcttctatgattgggccgaatgcaggctgattcaa
caaattgatgtcaccgtaaagaatctttattgggctgaaagtggtgatttagtagccatt
gctagtgatacgtcattctacatcttgaagtacaatcgagagttggtttcctcgcatttt
gatagtggaagaccaactgatgaagagggtgttgaggatgcttttgaggttctccacgag
aatgatgaacgtgttaggaccggtatatgggttggggactgcttcatttacaacaactct
tcttggaagcttaactattgtgttggaggcgaggtaaccacaatgtatcatttggaccgc
ccaatgtatttgttaggctatattgccaaccaaagccgggtttacttggtagacaaagaa
ttcaatgtcataggatataccctgctgcttagcctgattgaatacaagactcttgtgatg
cgaggcgatttggatagagccaatcaaattttacctacaattcctaaagagcagcataac
aatgttgctcatttcttggaatctcggggaatgattgaagatgctttagaaattgcgaca
gatccagactacaaatttgatctggccatacaactgggtagacttgaaattgcaaaggaa
attgctgaagaagtacagagcgagtctaaatggaagcagttaggagagttagccatgtcc
tcggggaagctgcaattggccgaggattgcatgaagtacgctatggatttgagtggtttg
ttactactatattcttctttgggagatgctgaaggggtgtcaaaacttgcatgccttgct
aaggaacaggggaagaacaatgttgcctttctttgcttatttacgctgggtagattggaa
gattgtctgcagttattggtggagagtaaccggataccagaagctgctctgatggcacgt
tcttatcttccaagcaaagtttcggagatagtagctctatggagggaagatctcagcaag
gttaatccaaaagcagctgaatctttagctgatcctgaagagtactcaaatctttttgag
gattggcaagttgctctttctgttgaagcgaacactgcagagacaaggggagtttatacc
gctgcagaaaattatccatcccatgccgataaaccttccattacccttgtggaagccttt
agaaacctgcaagttgaagcagaggaatcacttgaaaatggaaacatcgatcacgaggta
gcagaagaaaacggtcatgtagagaatgaaggagatgaagaggaacaacaggaagaagaa
gtgaatgaagaagagggagttgtggatgcagactctacggacggtgctgtacttgttaat
ggaagtgaggtgcttacgccacatccctag
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