Arabidopsis thaliana (thale cress): AT3G22270
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Entry
AT3G22270 CDS
T00041
Name
(RefSeq) Topoisomerase II-associated protein PAT1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AT3G22270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT3G22270
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
AT3G22270
mRNA degradation factors
5'-3' decay
Decapping complex
AT3G22270
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
bVLRF1
Motif
Other DBs
NCBI-GeneID:
821797
NCBI-ProteinID:
NP_188866
TAIR:
AT3G22270
UniProt:
F4J077
LinkDB
All DBs
Position
3:7874145..7878812
Genome browser
AA seq
782 aa
AA seq
DB search
MERSDSRDLYNFVRASSLDKNSTLFDASQYEFFGQNLDDMELGGLDDDGVIAPVLGHADD
DEYHLFDKGEGAGLGSLSDMDDLATTFAKLNRVVTGPKHPGVIGDRGSGSFSRESSSATD
WTQDAELTSWLDEQDQEAKRWSSQPQSFAHSKPLYRTSSYPQQQPQLQHYNSEPIILPES
NFTSFPPPGNRSPQASPGNLHRAPSLPGGSQLTYSAPSPLSNSGFHLSGLSQGPHYGGNL
TRYASCGPTLGNMVQPHWVTDPGHLHGDHSGLLHNLVQQQHQQLPPRNAIMSQHLLALQQ
RQSYAQLAALQSQLYSSYPSPSRKVPFGVGEVREHKHKSSHRSRKNRGLSQQTSDAASQK
SETGLQFRSKHMTSEEIESILKMQHSNSHSNDPYVNDYYHQAKLAKKSAGSKAISHFYPA
QLKDHQPRSRNSSEQHPQVHVDALGKITLPSVRRPHALLEVDSSPGFNDGSGDHKGSGKH
LEQEPLVAARVTIEDALGVLIDIVDIDRTLQNTRPQDGGAQLKRKRQILLEGLATALQLA
DPFSKTGQKSGMTAKDDIVFLRIATLPKGRKLLTKYLQLLVPGTENARVVCMAIFRHLRF
LFGGLPSDTLAAETISNLAKAVTVCVQAMDLRALSACLAAVVCSSEQPPLRPIGSSAGDG
ASVVLISLLERAAEVVVVPRVMHGNSNDGLWRASFDEFFNLLTKYCRSKYDTIRGQNQGS
AADVLELAIKREMPAELLRASLRHTNDDQRNYLLNFGRKPSAISESASHARGGQINSESV
RG
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atggagagatctgattcaagggatttgtataactttgttcgcgcttcttccttagataaa
aacagtacactctttgatgcatcacaatatgagttttttggacaaaatctggatgatatg
gaacttgggggtcttgatgatgatggagtaatcgctcctgttcttggacatgctgatgat
gatgagtatcacttgtttgataaaggagagggtgcaggtttaggatcactatctgacatg
gatgatcttgcgacaactttcgcaaagttaaacagagttgttaccggacccaaacaccct
ggagttattggtgatagaggatcaggatccttttcaagagagagttcttctgctaccgat
tggacacaagatgcagagctcacaagctggttggacgaacaagatcaagaagctaagaga
tggtcctcacagccacaatcatttgctcattcaaaacctttgtacaggacatcctcttat
cctcagcagcaaccgcagctgcagcactacaatagtgaaccgataattttaccagaatca
aattttacctcatttcccccgcctggtaacagatctccgcaggcttcacccggaaatctc
catcgcgctccttctcttcctggtggttctcagttgacctattctgcaccttccccgctg
tcaaattctggttttcatctttcaggattgtcgcaagggccccactatggtggtaatttg
actagatatgcctcgtgcggtcctacgcttggtaacatggtgcaacctcattgggtcact
gatcctggtcatctacacggagatcattctggtttattacataatctggtgcaacaacag
catcaacaattgcctcctcgaaatgctattatgtcgcaacatttgcttgccctccagcag
agacaatcatatgctcaacttgcagcgctacagtctcaactgtatagttcctatccttcg
ccatcacgtaaagtcccttttggagttggtgaagttagggaacacaaacataagtcatct
catagaagtcgaaagaatagaggactctctcaacagacatcagacgcagctagtcagaaa
agtgaaactggactgcagtttagatcaaagcacatgacttcagaagaaatagagagtata
ctcaagatgcagcattccaattcacacagcaatgatccctatgtcaatgattattaccac
caagcgaagcttgccaagaagtctgccggatctaaagcaatctctcacttctatcctgct
cagttgaaggaccaccagcctcggtcccgtaatagttctgaacagcatccacaagttcat
gtagatgctcttggtaaaattacacttccatctgtccgcaggccacatgccttgcttgag
gttgactcttctcctggttttaacgatggaagcggggatcataagggctcaggaaaacat
ttggaacaggaacctctcgttgcagctagggttacaattgaagatgctcttggagttctt
attgacatagttgacattgacaggactctccaaaacacaagaccccaggacggaggtgcc
caactcaagagaaagcggcagatcctgctagaaggattagcgacagcacttcaacttgct
gatccgttcagcaaaaccggtcagaaatctgggatgactgctaaggatgatattgtcttt
ctacgtatagcgactctccccaagggtcggaaattgcttacaaagtatctacaacttcta
gttccaggtactgagaatgctcgagttgtctgtatggctatattccgccacttgagattt
ctgttcggcggcctaccttcagatactctagcagcagagacaatatctaatcttgccaaa
gcagtcacggtttgcgttcaggccatggaccttcgagcactgagtgcttgccttgcagct
gtagtatgttcttcagagcagccacctctccgtcctatcggaagttctgctggagatggt
gcttcagttgtcttgatatctcttcttgagagagctgcggaagtagtggtggttcctcga
gtcatgcatgggaattctaatgatggtctctggagagcgtcatttgatgaattcttcaac
cttcttaccaaatactgcagaagcaagtatgacacaatccgtggacagaaccaagggagt
gcagcggatgttttggagctggcgataaagagggaaatgcccgctgagcttttacgtgcg
agtctgcgtcacaccaatgacgaccagaggaactatttattaaactttggtcgtaaacca
tcagcaattagtgagtcggcatctcatgcaaggggtggacagatcaactctgaatctgtg
aggggttaa
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