Arabidopsis thaliana (thale cress): AT3G25430
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Entry
AT3G25430 CDS
T00041
Name
(RefSeq) Polynucleotidyl transferase, ribonuclease H-like superfamily protein
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AT3G25430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT3G25430
Enzymes [BR:
ath01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
AT3G25430
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
AT3G25430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
822127
NCBI-ProteinID:
NP_189170
TAIR:
AT3G25430
UniProt:
Q8W4C3
A0A7G2ERY2
LinkDB
All DBs
Position
3:9221135..9223866
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AA seq
618 aa
AA seq
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MQRRFLSSISATAGNTKTLNQGRWSVKQVKKSNFHVTLDEIRTSIDSSDFIALSLQNTGS
YAAAWHRVSAIDTPQTSYLKAKYAAERYQILQFALCPFSLQGSKLTVHPYNFHLFPRDEL
KCGMPSYSFSCQASRLTAMAREGFDFNICIYEGISYLSRAQESASKFLSENPILADSVTV
SSSPATVADTVFVGRIRSRVKNWRQSCIDSGSKTGDDDLVSSLRRLVLGSEQYGSRLCLT
IDVCSERQVQLILEMLTEFSDDVVPLLVASKSRGTQAVRTVFMSSKEDKDLFKRELKDLE
KEENRRVRGFREVVDFISSSQKPVVSQNYLSDFTSIHAKFLGPLPSNVDDFSSSLSSAFP
NVVDLSQFMKEISPLSNISNLPAAMSSLNRFFAPVDVEVANQGCPVKLDEGHQSHGQNAV
MISQLFAKLCTIQKSDLSTIQSNEDFQALASDEHANSVTSCSKNAGDENVKVWSKNSRRV
SSENLVFIWGLGKKMTAAKLKNVLQKSHPVFAREFDVKYIDRSSAILVFWESGPSETFLS
AVNNEEQLDGSLREMVAEGLRGAGYETYKRACRLGFWEADLAESLDKALESSDTDPDSDT
KPSEIDWSNELAINFDEL
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaggcgcttcctttcgtcaatctccgccaccgccggcaatactaaaaccctaaat
caaggaagatggagtgtaaagcaagtgaaaaaatccaactttcatgtaactctcgacgag
attcgtacttccatcgattcatcagacttcatagctctctcattacaaaacactggctca
tacgccgccgcgtggcaccgtgtctccgccattgacacgccgcaaactagctacttaaaa
gctaaatacgcagccgaacgttaccagattctccagttcgctctctgccctttctctctt
caaggctctaaactcactgttcatccatataactttcatttgtttcctcgtgatgaattg
aagtgtggtatgccttcttatagcttctcttgtcaagcttcacgtttaacagctatggct
agagaaggatttgatttcaacatttgcatctatgaaggaatctcatacttatctagagca
caagagtctgcatcgaagtttctttccgagaatccgatattagctgattctgttactgta
tcttcttctccagctactgtagctgatactgtctttgttggaaggattaggtcacgtgtc
aagaattggagacagtcttgtatagactcgggttcaaagacaggagatgatgatttggtg
agctctttgagaaggctggtgttggggagtgagcagtatggttcaaggctgtgtttgact
attgatgtttgcagtgagcgtcaagtgcaacttatcctagagatgttgactgagttctct
gatgatgttgtccctctactggtcgcttcaaagagcagaggaacacaagctgttcgtact
gtctttatgagttcgaaggaggacaaggatctttttaagagagagcttaaagatcttgaa
aaggaagaaaacaggcgagttcgtggctttcgggaagtggtcgattttatttcttcttca
cagaaacctgtcgtttcccagaattatcttagcgattttacttccattcatgctaaattc
cttggtcctctaccttcaaatgtggatgacttcagcagttcactgagctcagcatttccc
aatgttgtggatctcagtcagttcatgaaagaaattagtcccttaagtaatataagtaat
ctacctgcagctatgtcctccttgaataggttctttgcacctgtggatgtagaagtagca
aatcaaggttgtccggtcaaattagacgaaggccatcagagtcacgggcagaatgctgtg
atgatatctcagctctttgcaaaactgtgtaccatacagaaatcagatctatcaactatc
caatcaaatgaagatttccaagctttggcttctgatgaacatgcaaattctgtcacctct
tgctctaaaaacgcaggtgatgaaaatgttaaagtctggtcaaagaacagccggagagta
agctctgagaacttggtgttcatatgggggttagggaaaaagatgacagctgcaaagctg
aagaatgtcctacaaaagtcacaccccgtcttcgcgagagagtttgatgttaagtacata
gaccggagctctgctattttggtgttttgggagtcaggtccttcagagactttcctcagt
gcggtcaacaatgaagagcaacttgatggttcattaagagagatggttgcagaagggcta
agaggggcaggttacgagacttacaagagagcttgtagattaggcttctgggaggctgac
ttggcggaatctttagacaaagcattggaatcttcagataccgaccctgattcggacact
aaaccatcagagattgattggtcaaacgaattagctattaattttgatgagctatga
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