Arabidopsis thaliana (thale cress): AT3G53230
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Entry
AT3G53230 CDS
T00041
Symbol
AtCDC48B
Name
(RefSeq) ATPase, AAA-type, CDC48 protein
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
AT3G53230 (AtCDC48B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT3G53230 (AtCDC48B)
03009 Ribosome biogenesis [BR:
ath03009
]
AT3G53230 (AtCDC48B)
04131 Membrane trafficking [BR:
ath04131
]
AT3G53230 (AtCDC48B)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ath04147
]
AT3G53230 (AtCDC48B)
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
AT3G53230 (AtCDC48B)
Ribosome biogenesis [BR:
ath03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
AT3G53230 (AtCDC48B)
Membrane trafficking [BR:
ath04131
]
SNARE
SNARE associated proteins
Others
AT3G53230 (AtCDC48B)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
AT3G53230 (AtCDC48B)
Exosome [BR:
ath04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
AT3G53230 (AtCDC48B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_2
AAA_5
AAA_22
AAA_33
AAA_14
TIP49
NPHP3_N
RNA_helicase
AAA_17
nSTAND3
Mg_chelatase
AAA_28
AAA_18
Parvo_NS1
ATPase_2
ABC_tran
IstB_IS21
Viral_helicase1
AAA_7
Vps4_C
NACHT
AAA_lid_PRS2_C
NB-ARC
AAA_24
TsaE
DUF815
Zeta_toxin
Zot
Motif
Other DBs
NCBI-GeneID:
824489
NCBI-ProteinID:
NP_190891
TAIR:
AT3G53230
UniProt:
Q9SCN8
A0A5S9XL49
LinkDB
All DBs
Position
3:19723350..19727128
Genome browser
AA seq
815 aa
AA seq
DB search
MANQAESSDSKGTKKDFSTAILEKKKAANRLVVDEAINDDNSVVSLHPDTMEKLQLFRGD
TILIKGKKRKDTVCIALADETCDEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGNRVH
ILPLDDTIEGVSGNIFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSIEFKVIETDPAEYCV
VAPDTEIFCEGEPIKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA
LRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERVSKDTHGYVGADLAALCT
EAALQCIREKMDVIDLDDEEIDAEILNSMAVSNDHFQTALGNSNPSALRETVVEVPNVSW
EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISIKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGNSVGDAGGA
ADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRYQI
FKSCLRKSPVAKDVDLRALAKYTQGFSGADITEICQRSCKYAIRENIEKDIEKERKRAES
PEAMEEDEEEIAEIKAGHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDA
PTGTTGAFPGAAATVGGVDPFATSGGAADDDDLYS
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatcaagctgaatcatctgattcgaaggggacgaagaaggattttagcaccgcg
attctggagaaaaagaaggcagcgaatcgtttggttgtggatgaagccattaacgatgat
aactccgtcgtttctcttcaccctgataccatggagaagctacagctttttcgtggtgat
actatcttaatcaagggaaagaagaggaaggatactgtgtgtattgctttagctgatgag
acatgtgatgaaccaaaaattagaatgaacaaggttgttaggtctaatctcagagttagg
cttggggatgttatttctgttcatcaatgtcctgatgtcaagtatgggaaccgtgttcac
atcttacctttagatgataccattgaaggagtaagtggcaatatatttgatgcatacctt
aaaccttatttcttagaggcatatcgtccggtgaggaagggcgatcttttcctagttaga
ggagggatgagaagtattgagtttaaggttattgaaactgatcctgctgagtactgtgtg
gttgctccagatacagaaattttctgtgaaggtgaaccgataaagagagaggatgaggag
aggttggatgaagttgggtatgatgatgttggtggtgtcaggaaacaaatggctcagatt
cgtgaacttgttgagctcccattgaggcatccacagctcttcaagtctattggtgtgaaa
cctcccaaaggaatcttgctctatggccctcctggttctgggaagacacttattgcccgt
gctgttgctaatgagactggtgcatttttcttctgtatcaatggtcccgagatcatgtcg
aagctagctggtgagagtgaaagtaacctcaggaaagcgtttgaggaagctgagaagaat
gccccttcgatcatattcattgatgagatcgattcgattgctccaaaaagagagaagact
cacggagaagttgaaagacggattgtatcccagctcttgacacttatggatggtcttaaa
tccagagcccatgtgattgttatgggagctaccaaccgtcccaacagcattgaccctgct
ttgagaagatttggacgttttgatagagaaattgatattggtgttcctgatgagattggt
cgtcttgaagttctcaggattcacaccaagaacatgaagcttgcggaagatgttgatttg
gaaagagtatctaaagacacccatgggtatgttggtgctgatcttgcagcattatgcact
gaagctgctctccaatgcattagggagaagatggatgtaattgacctagatgacgaggag
atagatgctgaaattctcaattctatggctgtcagtaatgatcatttccagactgccctt
ggtaacagcaatccttcagctctacgtgagactgtcgttgaggtgcctaatgtgtcttgg
gaggacattggtggtcttgagaatgtcaagagggagctccaagagactgttcaatatcca
gtggagcatcctgagaaattcgagaagtttgggatgtcaccgtctaaaggagtcctattc
tatggcccccctggttgtggaaagaccctcttggctaaggctattgcgaacgagtgtcaa
gccaacttcattagtatcaagggtcctgagctcctcacaatgtggtttggagagagtgaa
gccaatgtgagagagatattcgacaaggcacgacagtctgccccttgtgttcttttcttt
gatgagctggactccatcgccactcagagagggaacagtgttggagatgctggtggtgca
gcagatagagtattgaaccagcttcttacggagatggatggaatgaatgctaagaagacg
gtcttcatcatcggagctacaaacagaccagacattattgatcctgcacttctgcgtcct
ggtcgtctcgatcagctcatctacattcctcttcctgatgaggagtctcgttaccagatc
tttaagtcttgcttgaggaaatcacctgtggcgaaagatgttgacctgagggctcttgct
aagtacacccaaggcttcagtggtgcggacatcacagagatttgccagcgttcttgcaag
tatgcgatcagagaaaacatcgagaaggatattgagaaggagaggaagagagcagagtcg
ccagaagcaatggaagaggatgaggaggagattgcagagattaaagctggtcactttgag
gaatccatgaaatacgctaggagatcagtgagtgatgcagacattcgcaagtatcaggct
tttgctcagactctccagcaatcacgtgggtttggaagcgagttcaggtttccagatgcg
ccgacagggactactggagctttccctggagctgctgccacagttgggggagtcgacccg
tttgccacatccggaggagcagcggatgatgatgatctctacagttga
DBGET
integrated database retrieval system
