Arabidopsis thaliana (thale cress): AT3G54280
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Entry
AT3G54280 CDS
T00041
Symbol
RGD3
Name
(RefSeq) ROOT GROWTH DEFECTIVE 3
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
ath
Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ath03021
]
AT3G54280 (RGD3)
Transcription machinery [BR:
ath03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
AT3G54280 (RGD3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3535
SNF2-rel_dom
Helicase_C
HEAT
HEAT_EF3_N
TOR1L1_N
HEAT_ECM29
TPR_Trm732_C
HEAT_2
ResIII
TPR_TNPO3_IPO13_3rd
HEAT_GCN1
DUF7647
UTP20
Motif
Other DBs
NCBI-GeneID:
824595
NCBI-ProteinID:
NP_190996
TAIR:
AT3G54280
UniProt:
B5BT18
LinkDB
All DBs
Position
3:20091852..20104257
Genome browser
AA seq
2045 aa
AA seq
DB search
MAQQQSSRLNRLLTLLDTGSTQATRLTAAKQIGDIAKSHPQDLSSLLRKVLHHLRSKKWD
TRVAAAHAIGAIVLNVKHPSLSELLNSLATKLGEAGISDNVDEVVAFRNLQSKILANAPF
RSFEMNKVLEFGALLASGGQEYDILNDNSKNPRDRVARQKKNLRRRLGLDMCEQFMDVNE
MIRDEDLIEQKSNVPANGVGNRLYANCSPHHIQQFVSRMVPRVNSRRPSARELNLLKRKA
KISSKDQAKGSCEVADVEMSSSHVASTSKRILSDSLDSSKADIGNEDDIEPDGDGKWPFH
SFVEQLILDMFDPAWEIRHGSVMALREILMLHGGSAGVSTEEFSSDNGFELKDVLNKVTR
EREIDLNMQVSENELEPLRKRPKIEDPSKSFIDNTVLEVIGGDYDINVKDEDAEFLLPPV
KVNGQTDCSSTKLEPQSSMDDSTSHSEINHVAEVNNHFEDKSFIEEPVIPKQQEENLEVL
DLVKQARHSWIKNFEFLQDCTIRFLCVLSLDRFGDYISDQVVAPVREACAQALGATFKYM
NPSLIYETLNILLQMQRRPEWEIRHGSLLGIKYLVAVRQEMLQDLLGYILPACKAGLEDS
DDDVRAVAADALIPAAAAIVSLRGQTLLSIVMLLWDILLELDDLSPSTSSIMNLLAEIYS
QDDMTLVMHEELSLGEEQNIELNEMGHIESIGERRDVKESPYALSGLAPRLWPFTRHDIT
SVRFSAIRTLERLLEAGCRKNISGQSKSSFWPSSILGDTLRIVFQNLLLESTEEILECSE
RVWRLLVQCPVDDLEDTAKFYMASWIELAATPYGSTLDATKMFWPVAPPRKSHFKAAAKM
KAVKLENEASSILGFDYARSSASLEKQEDASARSTKIIVGSDMEMSVTRTRVVTASALGI
FASRLREGSMQFVVDPLSSTLTSMSGVQRQVGSIVLISWFRETKCKAPSDGSGSLPGFPS
PLKKWLLDLLACADPAFPTKDIFLPYAELSRTYTKMRNEASQLLHTVETCHCFDKLLSTN
KLNVESVTADETIDFASTLDLWNKESAGNESLEKQVFEDVESSRQQLLSTAGYLKCVQSN
LHITVTSLVAAAVVWMSEFPARLNPIILPLMASIKREQEQILQQIAAEALAELIAYCVDR
KPSPNDKLIKNICSLTCMDPSETPQASIISSMDIVDDMDFLSSRSNTGKQKAKVVLASGE
DRSKVEGFITRRGSELALKHLSLKFGGSLFDKLPKLWECLTEVLVPEIPSDQQKIDLKIE
SISDPQVLINNIQVVRSIAPVMEETLKPRLLSLLPCIFKCVRHSHVAVRLAASRCVMTMA
KSMTTDVMAAVVESAIPMLGDLTCISGRQGAGMLIGLLVQGLGVELVPYSPLLVVPLLRC
MSDVDSSVRQSVTRSFAALVPMLPLARGVPPPVGLSKDLSSNAEDAKFLEQLLDNSHIDD
YKLCTELKVQLRRYQQEGINWLGFLKRFKLHGILCDDMGLGKTLQASAIVASDAAERRGS
TDELDVFPSIIVCPSTLVGHWAFEIEKYIDLSLLSVLQYVGSAQDRVSLREQFNNHNVII
TSYDVVRKDVDYLTQFSWNYCILDEGHIIKNAKSKITAAVKQLKAQHRLILSGTPIQNNI
MELWSLFDFLMPGFLGTERQFQASYGKPLLAARDPKCSAKDAEAGVLAMEALHKQVMPFL
LRRTKEEVLSDLPEKIIQDRYCDLSPVQLKLYEQFSGSSAKQEISSIIKVDGSADSGNAD
VAPTKASTHVFQALQYLLKLCSHPLLVLGDKVTEPVASDLAAMINGCSDIITELHKVQHS
PKLVALQEILEECGIGSDASSSDGTLSVGQHRVLIFAQHKALLDIIEKDLFQAHMKSVTY
MRLDGSVVPEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFMEHDWNPMRDH
QAMDRAHRLGQKRVVNVHRLIMRGTLEEKVMSLQKFKVSVANTVINAENASMKTMNTDQL
LDLFASAETSKKGGGSSKKGSEDNDQIAGTGKGMKAILGNLEELWDQSQYTEEYNLSQFL
TKLNG
NT seq
6138 nt
NT seq
+upstream
nt +downstream
nt
atggcacagcaacaatcttcccgactcaatcgtctccttactttgttggacactggttca
acacaagctactcggctaactgcagccaagcagatcggggatattgcaaagtctcatcct
caggacttgagctctcttttgagaaaggttttgcatcacctccgtagtaaaaagtgggat
acgagggttgctgctgctcatgccattggtgccattgttctgaatgtcaaacatccttca
ttgagtgaactgttaaattctttagcaacgaagttgggtgaggcagggatatctgataat
gtagatgaagtggtggctttccgcaatcttcagtcaaagattctggcaaatgcgcccttt
agaagctttgagatgaataaggttttagagtttggcgctttgttggcttctggtgggcag
gagtacgacattttgaatgacaattccaagaatccaagggatcgagtggctcgtcagaaa
aagaatctccgacgacgtctaggtttggacatgtgcgagcagttcatggatgtcaatgaa
atgattagagatgaggatcttattgagcagaagtccaatgttcctgccaatggggttggg
aacagattatacgcaaactgttctccacatcatatccagcaattcgtttcaagaatggtt
ccccgcgtcaattctaggaggccaagcgcaagggaattgaatttactgaaacgaaaagca
aaaataagctctaaagatcaagctaaaggtagctgcgaagtagcagatgttgagatgtca
tcgtctcatgttgcctcaacctcaaaaagaatattgtccgactcattggactcgagcaag
gcggacattggtaatgaggatgatatcgagcctgatggggatggaaaatggcctttccat
agttttgttgagcaacttattcttgacatgtttgaccctgcatgggagatccgccatgga
agtgtaatggctctcagagaaatattaatgcttcatggtggttctgctggagtgtcaaca
gaagagtttagttcagataatgggtttgagttgaaagacgtcttgaataaagtaacacga
gaaagagaaatcgacttgaatatgcaggtttcagaaaatgagctggagccacttcggaaa
agacctaagattgaagatccatcaaaatcttttattgataacactgttttagaagttatt
gggggtgactatgatattaatgttaaagatgaagatgctgagtttttgctgccaccagtg
aaggtcaatggtcaaactgactgtagttctacgaaactggaacctcaatcttctatggat
gactcgacatctcactctgaaataaaccatgtggcagaggttaacaatcattttgaagat
aagagttttattgaggagccagttatacctaagcaacaggaagaaaatctcgaagtgttg
gatttggtcaaacaagctaggcattcttggataaaaaattttgaatttctccaggattgc
accattcgcttcttatgtgtgctttcacttgaccgatttggggattatatttctgatcag
gtagttgctcctgtgcgggaagcttgtgcccaagcacttggtgctactttcaaatacatg
aatccctcgttgatttatgagacattaaatatcttgcttcagatgcagcgccggcctgaa
tgggaaattcgtcatggaagtcttttaggcatcaagtacttggttgctgtgcgacaggaa
atgctccaagatttgcttggctatattcttccggcgtgtaaagcagggttggaggattct
gacgatgatgtgcgagcagttgccgctgatgctcttataccggcagcagctgctattgtc
tctttgagaggacagacattactttccattgtcatgctactgtgggatatcttacttgag
ttggatgacttaagtccatcaacaagcagtattatgaacctcctggcagaaatttattct
caagatgacatgaccctagtgatgcatgaggaattatcactgggggaggaacaaaatatt
gaactcaatgaaatgggtcatatcgagagtattggagaaagaagagatgtaaaggaaagc
ccttatgcattatcaggtttggcccctaggttgtggccattcacgaggcatgacataaca
tcagttcgattttctgctattcgaactctggaacgacttcttgaagctggatgcagaaaa
aacatttctgggcagtctaaaagttctttttggccatcttctattttaggggacaccctg
agaatcgtctttcaaaatcttttgcttgaatcaactgaggagattctggagtgttcagag
agagtgtggagactattggttcagtgcccagtggatgatctagaagacacggcaaaattc
tatatggcttcgtggatagaacttgcagctactccttatggctccacattggatgctaca
aaaatgttttggccagtagctccccctcgtaagagtcatttcaaagctgctgctaagatg
aaagctgtcaaacttgagaacgaagcttctagcattctgggatttgattatgcaagaagt
tctgcttcccttgaaaaacaggaagatgcttctgccaggtccactaaaattattgtcggc
tctgatatggagatgtcagtgacccgtacccgggtagttacagcatctgcattaggtatc
tttgcatcccggttgcgagagggttcaatgcagtttgtggtagatccactgagtagtact
cttacttctatgtccggtgttcagcgccaggttgggtccattgtgctcatctcttggttc
agagaaactaaatgcaaggccccttctgatggaagtggaagtttgcctggtttccctagt
cctctgaaaaaatggctgctagatttgttagcttgcgcagaccctgctttccctactaaa
gacatatttcttccttatgctgaactctcaagaacatacactaaaatgaggaatgaagct
tctcagttgttgcatacagttgaaacctgccattgttttgataagttattatcaacgaat
aaactcaatgtggagagcgtgactgctgatgagacaattgactttgcatcaacactagat
ttgtggaacaaagaaagtgctggaaatgaatccttagaaaagcaagtttttgaagacgtg
gagtcatctaggcaacagctattaagtactgctggttatttaaagtgtgtccagagtaat
ctacatatcacagtcacctccctggtcgctgctgcagttgtttggatgtcagaatttcct
gctagacttaatccaataatcttgccgctgatggcttcgattaaaagagagcaggaacaa
atactacaacaaatagctgctgaggctcttgcagagctcattgcatactgcgtagatcgg
aagccaagccccaatgacaagttaatcaagaatatctgtagcttgacgtgcatggatcct
agcgaaacacctcaagctagcatcattagctctatggatatcgttgatgatatggatttt
ctgtcctcacggagtaacacaggaaaacaaaaagcaaaagtcgtgttggctagtggcgaa
gataggtctaaagttgagggttttatcacgagaagaggatctgaactcgcgttgaagcat
ttaagcttgaaatttggtggttccttgtttgacaaactcccaaaattatgggagtgcctc
actgaggttcttgttcctgaaattccttcagatcaacagaagattgaccttaaaatagaa
tctatttcggatccacaggtcttaataaacaacatccaggtggtacgttcaatagcacca
gtgatggaagaaacactgaaacctagactgctcagtcttctgccttgtattttcaaatgt
gttcgccattcccatgtggctgttagattggctgcttctagatgtgttatgacaatggct
aaatcaatgacaacagatgtcatggcagcagtagtggaaagtgctattccaatgttggga
gatttaacatgcattagtggtagacaaggcgcaggaatgcttattggtttgcttgtgcaa
gggctgggtgttgaactggttccatattctcctctattggttgttcctctcctgagatgc
atgagcgatgttgacagttcagtcaggcagagcgtaacacgtagctttgctgcccttgta
cctatgcttccattagcacgtggtgttccccctcccgtcgggttgagcaaagatctatct
agcaatgcagaggatgcaaaatttttggagcagcttcttgacaactcccatatcgatgat
tacaagctttgcactgagctaaaagttcaattaagaaggtatcaacaagaaggaatcaat
tggttaggattcctaaagcgttttaagctccatggaattctctgcgatgatatggggctt
ggtaagactcttcaagcatctgcaattgtggcatccgatgcagcagagcgtcgtggttca
acagatgaactggatgtttttccatctataattgtttgcccttcaacattagttggtcat
tgggcatttgaaattgagaagtatatcgacctttctctgctaagcgtgttgcaatatgtt
ggctctgctcaagaccgcgtttctctccgtgaacagttcaacaaccataatgtcattata
acatcttatgatgtggtccgcaaggatgttgattatctgacgcaattttcatggaactac
tgtatcctggatgaggggcacataattaagaatgctaaatctaaaattactgcagcagtc
aaacaattgaaggcccagcaccggcttatccttagtggaacaccaatacagaataatatc
atggagctgtggtccctttttgacttcttgatgcctggatttcttgggacagagagacag
tttcaagcatcttatggaaaaccattgctggcagctagagatcctaaatgctctgctaag
gatgctgaagcgggtgtactggcaatggaagcactccataagcaggttatgccattctta
ctcagacgtacgaaagaggaagtcctctctgatttgccagaaaaaatcattcaggacaga
tattgtgaccttagtcctgtccagttgaagctttatgagcaattttctggttcaagtgct
aagcaagaaatatctagtatcataaaagttgatgggtcagcagattccggaaatgcagat
gttgcgccaacaaaagcatccacacacgttttccaggcactacagtacctgcttaaactc
tgcagtcatccgcttcttgttctaggcgataaggtcacagagccggtggcttctgatttg
gcagcaatgataaatggatgttcggacattatcactgagcttcataaagttcaacactct
ccaaagcttgtagctcttcaggaaattttagaagaatgtggaataggttctgatgcttct
agttcagatggcactcttagtgtaggccagcacagagttctgatatttgcacagcacaaa
gctttgctggatatcattgaaaaggacttgtttcaagcccacatgaaaagtgtcacatat
atgcgactagatggttcagttgtaccggagaaaaggtttgagattgtgaaagcctttaat
tcagatcctacaattgatgttctgctcctgacaacacatgttggtgggcttgggttgaac
ctgacctctgctgatacacttgtatttatggagcatgattggaacccaatgcgtgatcat
caggcgatggacagagcgcatagattgggacagaagagagttgtaaatgtacaccgtctg
ataatgcgtggcacacttgaagagaaagtgatgagtctccaaaaattcaaagtgtcggtt
gccaatacggtaatcaatgctgagaatgcgagtatgaagacaatgaacactgatcagttg
cttgacttgtttgcttcagctgaaacgtctaaaaagggtggtgggtcttcgaagaaggga
tcagaggataatgatcagattgctggaactggaaaaggaatgaaggcaattctaggaaac
ttagaagaactgtgggatcaatcacagtacacagaagagtacaatcttagccagttctta
actaagctcaacgggtaa
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integrated database retrieval system
