KEGG   Arabidopsis thaliana (thale cress): AT3G54490
Entry
AT3G54490         CDS       T00041                                 
Symbol
RPB5E
Name
(RefSeq) RNA polymerase II fifth largest subunit, E
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03020  RNA polymerase
ath03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    AT3G54490 (RPB5E)
  09124 Replication and repair
   03420 Nucleotide excision repair
    AT3G54490 (RPB5E)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ath03021]
    AT3G54490 (RPB5E)
   03400 DNA repair and recombination proteins [BR:ath03400]
    AT3G54490 (RPB5E)
Transcription machinery [BR:ath03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     AT3G54490 (RPB5E)
  RNA polymerase III system
   RNA polymerase III
     AT3G54490 (RPB5E)
  RNA polymerase I system
   RNA polymerase I
     AT3G54490 (RPB5E)
DNA repair and recombination proteins [BR:ath03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      AT3G54490 (RPB5E)
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N DUF1473
Other DBs
NCBI-GeneID: 824614
NCBI-ProteinID: NP_191013
TAIR: AT3G54490
UniProt: Q9M1H8 A0A5S9XMG6
LinkDB
Position
3:20173605..20175462
AA seq 233 aa
MEETMAEEGCCENVESTFDDGTNCISKTEDTGGIESKRFYLARTTAFEMLRDRGYEVNEA
ELSLTLSEFRSVFGEKPELERLRICVPLRSDPKKKILVVFMGTEPITVKSVRALHIQISN
NVGLHAMILVLQSKMNHFAQKALTTFPFTVETFPIEDLLVNITKHIQQPKIEILNKEEKE
QLLRKHALEDKQLPYLQEKDSFVRYYGLKKKQVVKITYSKEPVGDFVTYRCII
NT seq 702 nt   +upstreamnt  +downstreamnt
atggaggagacaatggccgaagaagggtgctgtgaaaatgttgagtcgacgtttgacgac
ggtaccaactgtatttcgaagactgaggacaccggaggaatcgaaagcaagaggttttac
ttggctcgcacgacagcttttgagatgcttcgcgatagaggctacgaagttaatgaagct
gagctctctctcactctttctgagtttcgttctgtttttggtgagaagcctgagcttgaa
cgcctccgtatctgcgttcctcttcgctcagatcccaagaaaaagatccttgttgtgttc
atgggaactgaaccaatcaccgtgaagtcagttcgtgctcttcatattcagatttccaac
aatgtaggcttgcatgctatgattctggttttacagagcaaaatgaaccactttgcccag
aaggcattgactaccttcccttttacagttgaaactttcccgattgaagatttgttggtc
aacatcacaaagcacattcagcagccaaagattgagattttaaacaaagaggagaaagaa
caactgctgaggaagcatgcacttgaggacaaacagcttccttatttgcaggagaaggac
agctttgtgaggtactatgggttaaagaaaaaacaggtggtgaagattacatacagtaaa
gagcctgttggggattttgtgacataccgatgcatcatctga

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