Arabidopsis thaliana (thale cress): AT3G54920
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Entry
AT3G54920 CDS
T00041
Symbol
PMR6
Name
(RefSeq) Pectin lyase-like superfamily protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath00040
Pentose and glucuronate interconversions
ath01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
AT3G54920 (PMR6)
Enzymes [BR:
ath01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
AT3G54920 (PMR6)
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Ortholog
Paralog
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
ATG14
Motif
Other DBs
NCBI-GeneID:
824657
NCBI-ProteinID:
NP_191052
TAIR:
AT3G54920
UniProt:
Q93Z04
A0A178VCI0
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All DBs
Position
3:20344785..20348659
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AA seq
501 aa
AA seq
DB search
MLLQNFSNTIFLLCLFFTLLSATKPLNLTLPHQHPSPDSVALHVIRSVNESLARRQLSSP
SSSSSSSSSSSSSSCRTGNPIDDCWRCSDADWSTNRQRLADCSIGFGHGTLGGKNGKIYV
VTDSSDNNPTNPTPGTLRYGVIQEEPLWIVFSSNMLIRLKQELIINSYKTLDGRGSAVHI
TGNGCLTLQYVQHIIIHNLHIYDCKPSAGFEKRGRSDGDGISIFGSQKIWVDHCSMSHCT
DGLIDAVMGSTAITISNNYFTHHDEVMLLGHDDNYAPDTGMQVTIAFNHFGQGLVQRMPR
CRRGYIHVVNNDFTEWKMYAIGGSGNPTINSQGNRYSAPSDPSAKEVTKRVDSKDDGEWS
NWNWRTEGDLMENGAFFVASGEGMSSMYSKASSVDPKAASLVDQLTRNAGVFGGPRDDQG
QSGNSYSPYGGDGGGGGSSGGSSGGGMDVMGGTTRGSSSSSGDDSNVFQMIFGSDAPSRP
RLTLLFSLLMISVLSLSTLLL
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgcttcttcaaaacttctccaacaccattttccttctctgcctcttcttcacactcctc
tccgccactaaacccctaaatctcactctccctcaccaacacccttcccctgattccgtc
gctctccatgtcatcaggagtgtaaatgaatctcttgcaagaagacaactaagctcacca
tcatcatcctcatcatcatcatcctcctcatcatcatcctcttgccgtaccggaaaccca
atcgacgattgctggagatgcagcgacgcagactggtcaacaaaccgacaaagactagca
gactgttcaatcggcttcggacacggcacactcggaggcaaaaacggcaagatctacgtc
gtaactgactcatccgacaacaacccaacaaacccaacaccaggaacactccgttacggc
gtaatccaagaagagccactctggatcgtcttctcttcaaacatgctcatcagactaaaa
caagaactcatcatcaacagctacaaaaccttagatggtcgtggctcagccgttcacatt
accggaaacggttgcttaactctccaatacgttcaacacatcatcatccacaacctccat
atctatgactgtaaaccttcagctggattcgagaaacgtggtagatccgatggagatggg
atctcgatcttcggatctcagaagatctgggttgatcattgttcaatgagtcattgcacc
gacgggctaattgatgctgtgatgggttctacagctataactatatctaacaattacttc
acccaccacgacgaggttatgttgttgggtcatgatgataactatgctcctgatacgggg
atgcaagtgacgatagcgtttaatcatttcggacaagggcttgttcagaggatgcctagg
tgtcggagaggttacattcatgtagtgaataatgatttcactgagtggaaaatgtatgct
attggtggtagtggtaatcccaccattaacagtcaaggaaatcgttactctgctccttct
gatcctagcgccaaagaggtgacgaagcgagtggactcgaaggacgatggtgaatggtcg
aattggaattggagaacagaaggggatttgatggagaatggagctttctttgtggcctct
ggtgaaggaatgagctcaatgtactctaaagcttctagtgttgaccctaaagctgcttct
ctcgtagaccagctcactcgaaacgctggcgtttttggcggtcccagggatgatcaaggt
cagagtggcaattcttactctccttatggaggcgacggcggtggcggtgggagcagcggt
gggagcagcggtggagggatggacgttatgggaggtacgacgagaggaagcagcagcagc
agcggcgatgacagcaatgtcttccagatgatatttggaagcgatgcaccgtctcggccg
cgtttaacgttattgttttctttgttaatgatttcggttttgtcgttatcaactctatta
ttgtga
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