Arabidopsis thaliana (thale cress): AT3G62980
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Entry
AT3G62980 CDS
T00041
Symbol
TIR1
Name
(RefSeq) F-box/RNI-like superfamily protein
KO
K14485
transport inhibitor response 1
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
AT3G62980 (TIR1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ath04121
]
AT3G62980 (TIR1)
Ubiquitin system [BR:
ath04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
AT3G62980 (TIR1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
F-box-like
LRR_4
F-box
LRR_NXF1-5
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
825473
NCBI-ProteinID:
NP_567135
TAIR:
AT3G62980
UniProt:
Q570C0
A0A178VA54
Structure
PDB
PDBj
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Position
3:complement(23273065..23276630)
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AA seq
594 aa
AA seq
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MQKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPAT
VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDD
CLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP
DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEEL
GTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT
VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALT
EQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPL
DIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGC
DSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDE
RGAPDSRPESCPVERVFIYRTVAGPRFDMPGFVWNMDQDSTMRFSRQIITTNGL
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagcgaatagccttgtcgtttccagaagaggtactagagcatgtgttctcgttt
attcagctggataaggataggaactcagtctctctggtgtgcaagtcatggtacgagatc
gagcggtggtgcaggaggaaagtcttcatcgggaactgctacgccgtgagtccagcgacg
gtgattaggaggttcccgaaagtgagatccgtggagcttaaaggaaaacctcactttgct
gactttaatttggtacctgacggatggggaggttacgtgtatccatggattgaggccatg
tcttcgtcttacacgtggcttgaagagataaggctgaagaggatggtggtcaccgacgat
tgcttggagctcatagccaagtcttttaagaattttaaggttcttgtgctttcttcctgc
gaaggcttctccaccgatggtctcgctgctatcgctgccacttgcaggaatctgaaagag
cttgacttacgagagagtgatgttgacgacgttagtggccactggcttagccatttccca
gatacatacacttctttggtatcactcaatatatcttgcttagcatctgaggtcagtttc
tctgctctggaaaggctggtgactaggtgtcccaatctcaagtctctcaagcttaaccga
gctgttccacttgaaaaattggctactttacttcaaagagcacctcaattggaggaattg
ggcactggtgggtacactgcagaagtgcgaccagatgtttactctggtttatctgtagcg
ctctctgggtgcaaggaattgaggtgcttatctggattttgggatgctgttcctgcctat
cttccagcagtttattcggtttgcagtcggcttacaactttgaatctgagttatgcaaca
gtccagagctatgatcttgtcaagcttctttgtcaatgccctaaactgcagcgcctctgg
gtgcttgactacatcgaggatgctggtcttgaggtgcttgcttcaacctgcaaggaccta
cgcgagctgagagtgtttccgtccgagccttttgtcatggaaccaaatgtggcattgacg
gaacaggggcttgtctccgtctccatgggctgtccaaaactcgagtcggttctctacttc
tgccgtcaaatgaccaatgctgcattgataaccattgctaggaaccgtcccaacatgact
cgcttccgtttgtgcatcattgagccaaaagccccagactatctgactctagagccactg
gatattggatttggagccatagtagagcactgcaaggatctccgtcgcctctctctatct
ggcctcttgaccgacaaggtttttgaatacattgggacatatgccaagaagatggaaatg
ctctcagtggcatttgcaggagacagtgacttaggcatgcatcatgttttgtccgggtgc
gatagcttgaggaaactagagataagggactgcccgtttggagacaaggcgcttttggcc
aatgcttcaaagctggagacaatgcgatccctttggatgtcttcttgttccgtgagtttt
ggagcctgcaagttactaggacagaagatgccaaagctgaatgtggaagtcatcgatgaa
cggggtgcaccggactcgagaccagagagctgccctgttgagagagtcttcatataccga
acagtggctggtcctcgatttgacatgcctggcttcgtctggaacatggaccaagactca
acaatgaggttttccaggcaaatcattactactaacggattataa
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