Arabidopsis thaliana (thale cress): AT4G01020
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Entry
AT4G01020 CDS
T00041
Name
(RefSeq) helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-like protein
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
AT4G01020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ath03041
]
AT4G01020
Enzymes [BR:
ath01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AT4G01020
Spliceosome [BR:
ath03041
]
Complex C
Other components
Step II factors
AT4G01020
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RBD_DEAH11
KH_DEAH11_2nd
KH_DEAH11_1st
KH_DEAH11
RRM_DEAH11
Helicase_C
IBR
OB_NTP_bind
DEAD
AAA_22
IBR_1
Rcat_RNF216
AAA_19
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_5
NAT10_TcmA_helicase
KH_SLS1_1
ABC_tran
KH_Vigilin
Katanin_con80
WHD_HA2
ResIII
KH_1
nSTAND_NTPase5
AAA_29
Motif
Other DBs
NCBI-GeneID:
826439
NCBI-ProteinID:
NP_567206
TAIR:
AT4G01020
UniProt:
P0CE10
LinkDB
All DBs
Position
4:438991..445218
Genome browser
AA seq
1787 aa
AA seq
DB search
MRNSFPPSDGGRSTTDRRQQSFPSSSTNRYNSRSAQSSPPLNHCTTWNQQHSQYHNTNFP
PNYRRDRAPSSGFSPPVTRARPNFIVQLLHPAAANSDTKLSKKQEIESIALLCEIPEESV
HVPQFGCIAASFSFRQWVDARSAVVALWDYRLQGRHDFVPELIPNVVVPSDMDELKDRLR
DLFSSHVLSLMENGQGVKKVRMEIDDKSRQVASFSSKRGLKFEVFEKKKALEAERDLVVN
RLDEFNNAMKSILRYLIGQDGYEFDVDDEDDEDVAVFSLEGAYDWRRIHYLILRECRRLE
DGLPIYAYRRQILKKIHCEQIMVLIGETGSGKSTQLVQFLADSGVAASESIVCTQPRKIA
AMTLTDRVREESSGCYEENTVSCTPTFSSTEEISSKVVYMTDNCLLQHYMKDRSLSGISC
VIIDEAHERSLNTDLLLALLRKLLSRRIDLRLVIMSATADANQLSQYLFDCGILHVNGRN
FPVEIVYSPSGTEENSVVGRIASYAGDVVKMAVEIHKTEKEGTILAFLTSQAEVEWACER
FVAPSAIALPLHGKLSFEEQFMVFQNYPGRRKVIFATNIAETSLTIPGVKYVIDSGMVKE
SKYEPRTGMSILKVCQVSQSSARQRAGRAGRTEPGRCYRLYSKTDFDSMNLNQEPEIRRV
HLGVALLRMLALGIDNIAAFEFVDAPVPEAIAMAIQNLVQLGAVVEKNGVLELTQEGHCL
VKLGLEPKLGKLILGCFRHRMGKEGIVLAAVMANASSIFCRVGNFDDKMKADRLKVQFCN
DNGDLFTLLSVYKEWASLPRDRRNKWCWENSLNAKSMRRCEDTVKELEICIERELTLVSP
SYWVWNPNEGTKHDKYLKMVILASLAENVAMYTGYDQLGYEVALTSQQVQLHPSCSLLAF
GQKPSWVVFGELLSIVDQYLVCVTAFDFEALYMLDPPPPFDASQMDERRLRVKKVVGCSS
TVLKRFCGKSNRSLLSIVSRARSLCSDERIGIQVDVDQNEIRLYASPLDMEKVSALVNDA
LECEKKWMRNECLEKYLFHGRGQIPIALFGSGAQIKHLEVDQRFLTVDVHYYGDDVVDDR
ELLTFLEKKIDGCICSIYKFAANKQDCDEKEKWGRITFLTPESAMKATEIQKFDFKGSVL
KVFPSLSTGGGIFKMPYFSSVTAKIRWPRKESSGRGCLKCPSGDIHSILGDITSLEIGTN
YVHIQRDQLSNDSILISGLGDLSEAEVLDVLEFRTQRRDLNFFIFRKKYSVQCPSPTACE
EELHKRIFARMSAKNPEPNCVQVQVFEPKEDNYFMRALIKFDGRLHLEAAKALQELNGEV
LPGCLPWQKIKCEQLFQSSIICSASIYNTVKRQLNVLLARFERQKGGECCLEPTHNGAYR
VKITAYATRPVAEMRRELEELLRGKPINHPGFTPRVVQHLMSRDGINLMRKIQQETETYI
LLDRHNLTVRICGTSEKIAKAEQELVQSLMDYHESKQLEIHLRGPEIRPDLMKEVVKRFG
PELQGIKEKVHGVDLKLNTRYHVIQVHGSKEMRQEVQKMVNELAREKSALGEKPDEIELE
CPICLSEVDDGYSLEGCSHLFCKACLLEQFEASMRNFDAFPILCSHIDCGAPIVVADMRA
LLSQEKLDELISASLSAFVTSSDGKLRFCSTPDCPSIYRVAGPQESGEPFICGACHSETC
TRCHLEYHPLITCERYKKFKENPDLSLKDWAKGKDVKECPICKSTIEKTDGCNHLQCRCG
KHICWTCLDVFTQAEPCYAHLRTIHGGIGLVELGVPEHPVAQPVHRL
NT seq
5364 nt
NT seq
+upstream
nt +downstream
nt
atgaggaactcttttcctccttcagacggtgggagatcgacgactgatcgtcgtcagcag
tcgtttccctcatcctcaacgaaccgttataactctcgctctgcacaatcttctccgccg
ctcaaccactgtactacttggaaccagcaacactctcagtaccataacactaatttcccg
ccaaattacagacgtgatcgtgctccgtcgtcgggattctctcctccagtcacgcgggct
aggcctaatttcatcgttcagctgcttcaccccgccgccgctaacagtgacacaaagctg
tctaagaagcaagagatcgagagtatcgctttgctttgcgaaattccggaggaatcagtt
cacgtgcctcaatttggttgtatcgctgcaagcttcagttttcgtcagtgggtcgatgcg
cgttctgccgttgtggctctttgggattatcgtcttcaagggagacatgattttgttcct
gagctgattcctaatgttgttgttccgtctgacatggacgagcttaaagacaggcttcgt
gatcttttctcgtctcatgttctttcgcttatggaaaatggacaaggggtcaagaaggtg
agaatggagattgatgacaagtctcgtcaagttgcgtccttttcgtctaaaaggggtctg
aaatttgaggtttttgagaaaaagaaggctcttgaagcggagagagatttggttgtgaat
cggcttgacgaattcaataatgccatgaagagcattttgcgatatctcataggacaagac
gggtatgagtttgatgtagatgatgaagatgacgaagacgtggccgtgttttctttggaa
ggggcctatgattggagacgtattcattatttgattcttagagagtgtcgaaggctagag
gatggactgcctatctatgcctaccggcggcagattttgaagaaaattcattgtgaacag
ataatggtgttgattggagaaactggttcagggaagagcactcagttagttcagttcctt
gctgattccggagttgctgctagtgagtcgattgtttgtacacaaccacggaagattgct
gccatgacattgactgatcgggtcagagaagaaagcagtggttgttatgaggaaaatact
gtttcttgtactccaactttttcgtctactgaggagattagttccaaagttgtatacatg
acggataattgtctgcttcagcactacatgaaagatcggagtttgtctggcatttcatgt
gttattattgacgaagctcatgaaagaagcttaaacacggaccttcttttggcattgctt
agaaagttgctatccagaaggattgacctgaggcttgttatcatgtctgccacggctgac
gccaaccaactttcacagtatttgttcgattgtggtattcttcatgtcaatgggaggaac
tttccggtggagattgtatattcccctagtggcacagaagagaattctgttgttggccgc
attgcttcatatgctggtgatgttgttaagatggcagtggaaatacataaaacagagaaa
gaaggaaccatccttgcattcttgacttcccaagcagaggtagaatgggcatgcgaaagg
tttgtagctccgtctgcaattgctttgcctttgcatggaaagctttccttcgaagaacaa
tttatggttttccagaactatcctgggagacgaaaagtgatatttgccacgaatattgca
gagacgtcgctgactattcctggtgtcaagtatgtaattgattccgggatggtgaaagag
agtaaatatgaacctagaacgggtatgagcatcctaaaggtgtgccaggtcagtcagagt
tctgctcgacaacgtgctggtcgtgctggaaggacagaacccggaagatgttacaggctc
tactcaaaaaccgattttgattcaatgaatcttaatcaagaacctgaaattcggagggtc
catcttggtgtagcacttttgaggatgcttgctttgggaatagacaacatagcggctttt
gagtttgttgacgcgcctgtcccggaagccattgcaatggctatccaaaatcttgttcag
ttgggtgcagtcgttgagaagaacggtgttcttgaattaacacaggaagggcattgttta
gtcaagctggggctggaaccaaagcttggaaagttaattttaggctgcttcagacacaga
atgggcaaagaggggattgttcttgctgctgtcatggctaatgctagtagtatattttgc
agagttggtaactttgatgataagatgaaagctgatcgcctaaaggtgcaattctgcaat
gataatggagacttgttcactcttctttcggtgtacaaagaatgggcatctctgccacga
gatagaagaaataaatggtgctgggaaaatagcctgaatgccaaatcaatgaggagatgt
gaagacacagtcaaggaattggagatatgcattgagagagaacttactcttgtcagccct
agttactgggtttggaatccaaatgagggtactaaacacgacaagtatttgaaaatggtt
atacttgcatctcttgcagaaaacgtggcgatgtacactggctatgatcagcttggatac
gaggtggcattgactagtcaacaagttcagttacatccatcgtgttcattgctagcattt
ggccagaagccaagctgggttgttttcggggaacttctatctattgtggaccagtacttg
gtatgtgtaactgcgtttgattttgaagctttgtatatgcttgatccaccaccacctttt
gatgcatcccagatggatgagcggaggctccgagttaaaaaagtggttggttgtagtagc
actgtgctaaaacgattctgtgggaaatctaatcgtagtctgctttcaattgtttctcgt
gctaggtctctttgttcggatgaaaggattggtatccaagtcgatgtcgatcagaatgag
attcgactgtatgcgtctcccctcgacatggaaaaagtgtcagcccttgtgaacgatgca
ttggaatgtgaaaagaaatggatgcgtaatgaatgtttggagaagtatctatttcatggt
cggggacaaatacctattgcactgtttggatctggtgctcagataaagcatcttgaagtt
gatcagagatttctgacagtcgatgtacattattatggcgacgatgttgttgatgacaga
gagcttctgacgtttctggagaagaagattgatgggtgtatctgctctatttacaagttt
gctgcgaacaagcaagactgtgatgagaaggagaagtggggtagaataacctttctcact
ccagaatctgctatgaaggcaacagaaattcagaaatttgatttcaaaggatcagtgctc
aaagtatttccatcactgtcaactggtggaggaattttcaagatgccttatttctcttcc
gtgacagctaagattcgttggccgagaaaggaaagtagtggtagaggatgccttaagtgc
ccttccggagatattcacagtatacttggtgatataaccagccttgagataggaacaaat
tatgtccatattcagagagatcaactgtccaatgattctatcttgataagtggacttgga
gatctttcggaagcagaagttttagatgttttggaattcagaacgcagagaagagatctg
aattttttcatattcagaaaaaaatacagtgtgcagtgcccatctcctactgcttgcgaa
gaagagcttcataagagaatatttgcgcgcatgtcagcaaagaatccagagccaaactgt
gtccaagttcaagtttttgaaccaaaagaagacaattacttcatgcgagcgttaattaag
tttgacgggagattacatctcgaagctgcaaaagctttgcaagagttaaatggggaggtg
ttacctggatgtcttccatggcagaagataaagtgcgaacaattgtttcagagctccata
atctgctccgcttctatctacaacactgtcaaaagacaattgaacgttttattagcaagg
tttgagagacaaaaagggggtgaatgctgtctggaaccaactcataacggggcttatcgt
gttaaaattactgcttatgcaacaagacccgttgcggagatgcggagagagcttgaagaa
ctcttaagaggaaaacccataaaccatccaggcttcacacctagagtcgtgcagcatctt
atgtccagagatggtattaatctgatgcggaagatccaacaggagacagaaacttacatt
ctattagataggcacaatctcacagtacgcatttgtggaacaagtgagaaaattgccaag
gcagaacaagaactggttcagtcacttatggattatcatgagagcaagcaacttgaaatc
cacctccgaggtcctgagatccgtcctgacctcatgaaggaagttgtgaagcggtttggt
ccggagctccaaggtatcaaagaaaaggtgcatggtgtggatctcaagctcaatacccgg
taccatgttattcaggttcatgggagcaaagaaatgaggcaggaagtacaaaagatggtc
aatgaacttgcacgagaaaagagtgcactgggtgaaaaaccagatgagattgaacttgaa
tgccccatttgcttgtctgaagttgatgatggctactctcttgaaggatgttcacacctc
ttctgcaaagcttgtttgttggagcaatttgaggcatcgatgagaaactttgacgcattc
ccaatactttgttctcacatagactgtggagctccaatagtagtcgctgatatgagagcc
ctcttatcacaagagaagctcgatgaactcatcagtgcatccttgtccgcttttgtaaca
tccagtgatggaaagttgaggttttgctccacacctgattgcccttccatctaccgtgta
gctggacctcaagaatccggtgagccattcatctgtggagcatgtcactcagaaacatgc
acaaggtgtcacctcgagtatcacccgttaatcacttgtgaaaggtacaaaaagttcaag
gagaatccggacttgtcgcttaaggactgggcaaaagggaaggacgtaaaggagtgtccg
atttgcaagtcgacgatagagaagactgatgggtgtaaccatctgcagtgccggtgtgga
aagcacatttgttggacctgcttagacgtcttcactcaggcagaaccttgttatgcccat
ttaaggacaattcatggtggaatcggattagtcgagttaggtgtcccagagcaccctgtt
gcccagcctgttcacaggctttga
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integrated database retrieval system
