KEGG   Arabidopsis thaliana (thale cress): AT4G05420
Entry
AT4G05420         CDS       T00041                                 
Symbol
DDB1A
Name
(RefSeq) damaged DNA binding protein 1A
  KO
K10610  DNA damage-binding protein 1
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03420  Nucleotide excision repair
ath04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    AT4G05420 (DDB1A)
  09124 Replication and repair
   03420 Nucleotide excision repair
    AT4G05420 (DDB1A)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ath04121]
    AT4G05420 (DDB1A)
   03400 DNA repair and recombination proteins [BR:ath03400]
    AT4G05420 (DDB1A)
Ubiquitin system [BR:ath04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Adoptor protein
     AT4G05420 (DDB1A)
DNA repair and recombination proteins [BR:ath03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      AT4G05420 (DDB1A)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      AT4G05420 (DDB1A)
SSDB
Motif
Pfam: Beta-prop_RSE1_2nd Beta-prop_RSE1_1st CPSF_A
Other DBs
NCBI-GeneID: 825890
NCBI-ProteinID: NP_192451
TAIR: AT4G05420
UniProt: Q9M0V3 A0A178UYD4
LinkDB
Position
4:2746114..2753014
AA seq 1088 aa
MSSWNYVVTAHKPTSVTHSCVGNFTSPQELNLIVAKCTRIEIHLLTPQGLQPMLDVPIYG
RIATLELFRPHGEAQDFLFIATERYKFCVLQWDPESSELITRAMGDVSDRIGRPTDNGQI
GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLFGCAKPTIAVL
YQDNKDARHVKTYEVSLKDKDFVEGPWSQNSLDNGADLLIPVPPPLCGVLIIGEETIVYC
SASAFKAIPIRPSITKAYGRVDVDGSRYLLGDHAGMIHLLVITHEKEKVTGLKIELLGET
SIASTISYLDNAVVFVGSSYGDSQLVKLNLHPDAKGSYVEVLERYINLGPIVDFCVVDLE
RQGQGQVVTCSGAFKDGSLRVVRNGIGINEQASVELQGIKGMWSLKSSIDEAFDTFLVVS
FISETRILAMNLEDELEETEIEGFLSQVQTLFCHDAVYNQLVQVTSNSVRLVSSTTRELR
DEWHAPAGFTVNVATANASQVLLATGGGHLVYLEIGDGKLTEVQHALLEYEVSCLDINPI
GDNPNYSQLAAVGMWTDISVRIFSLPELTLITKEQLGGEIIPRSVLLCAFEGISYLLCAL
GDGHLLNFQMDTTTGQLKDRKKVSLGTQPITLRTFSSKSATHVFAASDRPTVIYSSNKKL
LYSNVNLKEVSHMCPFNSAAFPDSLAIAREGELTIGTIDDIQKLHIRTIPLGEHARRICH
QEQTRTFGICSLGNQSNSEESEMHFVRLLDDQTFEFMSTYPLDSFEYGCSILSCSFTEDK
NVYYCVGTAYVLPEENEPTKGRILVFIVEDGRLQLIAEKETKGAVYSLNAFNGKLLAAIN
QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLLYKHEEGA
IEERARDYNANWMSAVEILDDDIYLGAENNFNLLTVKKNSEGATDEERGRLEVVGEYHLG
EFVNRFRHGSLVMRLPDSEIGQIPTVIFGTVNGVIGVIASLPQEQYTFLEKLQSSLRKVI
KGVGGLSHEQWRSFNNEKRTAEARNFLDGDLIESFLDLSRNKMEDISKSMNVQVEELCKR
VEELTRLH
NT seq 3267 nt   +upstreamnt  +downstreamnt
atgagctcatggaactacgttgttacggctcacaaaccgaccagtgtcactcactcgtgc
gttggcaacttcacaagtcctcaagagctcaatctcattgtcgcgaaatgtactcgaatc
gagatccatttgcttaccccacaaggacttcagcctatgttggacgttcctatatatgga
agaatcgctactctggagttgttccgaccccatggcgaagcgcaagactttttgttcatt
gcaactgagagatacaaattctgtgttcttcaatgggatcctgagtcctctgagcttatt
acaagagcaatgggggatgtttctgatcgtataggccggccaacagacaatggtcagatt
ggtataattgatccagattgtagattaattggactccatctgtatgacggcttgttcaag
gttattccatttgataataagggacagctcaaggaagcttttaatatcaggcttgaggaa
ttgcaggttctggatatcaagtttctgtttggatgtgcaaagcccactattgcagtacta
tatcaggacaacaaagatgctcgtcatgtcaaaacatatgaagtctctcttaaagataag
gattttgtcgagggtccatggtctcagaacagtctcgacaatggtgctgacttgctgatt
cctgtaccaccaccgctctgtggtgtccttattattggtgaagaaacaattgtctattgc
agtgctagtgcattcaaagcaataccaataagaccttccatcactaaagcatatggaaga
gttgatgttgatggctctagatatcttcttggtgaccatgctggaatgattcatctgctt
gttataacgcacgagaaagaaaaggtcactggcctaaaaattgagcttttgggtgaaaca
tctattgcatcgactatatcgtaccttgacaatgccgttgtctttgtcggctcaagctat
ggtgattcacagctagtaaagctgaatctacaccctgatgcaaaaggctcatatgtagaa
gtcttggaaaggtatatcaacttggggcctattgtcgacttttgtgtagttgacctcgag
agacaggggcaaggtcaggttgtaacttgttctggagcatttaaggatggttccctccgc
gtagttcgcaatggaataggaatcaatgaacaggcgtctgtggaacttcaaggtatcaaa
ggaatgtggtcgttgaaatcttcaattgatgaagccttcgatacatttcttgttgttagc
tttatcagtgaaactcgcatattagccatgaatcttgaggatgaactggaagaaacagag
attgagggcttcttgtctcaagtgcagacgttattttgccatgatgctgtgtacaatcaa
cttgtacaggttacctcaaattctgttagactagtcagttctacaactagagaattgcgg
gacgagtggcatgccccagctggattcactgttaatgttgcaactgcaaatgccagccag
gttcttttggcgactggaggtgggcatttggtttatctagaaattggagatgggaaattg
acggaagtgcaacatgcccttttggagtacgaggtttcctgtcttgatataaaccctatc
ggtgacaatcctaattacagtcagctagctgcggttgggatgtggacagatataagtgtg
aggatcttttcgctgccagaattgactcttattacaaaagagcaacttggaggggaaata
attccccgatctgttcttctttgtgcattcgaagggatatcttacttgctatgtgctctt
ggagatggccatcttttgaacttccagatggatacaactaccggacaattaaaagacagg
aaaaaagtatcactcgggactcagcctataactctgcgtacattttcatcaaaaagcgcc
acacatgtctttgctgcatcagatagaccaaccgtgatctatagcagcaacaagaagctg
ttatatagcaatgtcaatcttaaagaagttagtcatatgtgccctttcaattctgctgct
tttcccgacagtttagcaattgccagggaaggtgaacttacgattggaaccattgatgat
attcagaagcttcacatacgtactattcctcttggagagcatgctcgtcgaatttgccat
caggagcagacacgtacatttggtatctgcagtttgggaaaccagtcaaattccgaagaa
tctgaaatgcactttgtccgtcttttggacgaccagactttcgagtttatgtcaacttac
cccttggattcctttgaatatggttgttcaattctgagctgctcattcaccgaagataaa
aatgtctattactgcgttggaaccgcatatgttttaccggaggaaaatgaaccaactaag
ggaaggatattagtatttatagtcgaagatgggaggttgcagctaatcgccgagaaagaa
accaaaggagctgtttattctctcaatgcctttaatggaaaacttcttgctgctattaat
cagaagattcagttgtacaagtggatgctgagggatgatggcactcgtgaactgcagtct
gaatgcggacatcacggacacattctagctctctatgtgcagacccgtggagactttata
gttgttggtgatctcatgaaatcaatctccttattgctatacaagcacgaggaaggtgca
attgaggagcgggctcgggattacaatgcaaattggatgtcagcggttgagatactcgat
gatgatatttacctcggtgctgagaacaatttcaatctgttaacagtgaaaaagaacagt
gaaggtgctactgatgaagaacgaggacggttagaggtagttggagagtatcaccttggg
gaatttgtgaacagattccgccatggatctctagtaatgaggctacctgattcagagatt
ggtcagatcccaactgtcatctttggtacagtcaatggagtgattggagtaatagcttca
cttcctcaagaacaatatactttcttggagaagttgcagtcaagtttgagaaaagtgatt
aaaggagtcggcggattaagccacgagcaatggaggtcgtttaataacgagaaaagaacc
gcggaagcgaggaatttcttggatggtgacttaatcgaatcgtttctggatctgagtaga
aacaagatggaggatatatcgaaatccatgaatgttcaagtggaggagttgtgtaagaga
gttgaagaactcactaggcttcactga

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