Arabidopsis thaliana (thale cress): AT4G14990
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Entry
AT4G14990 CDS
T00041
Name
(RefSeq) Topoisomerase II-associated protein PAT1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AT4G14990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT4G14990
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
AT4G14990
mRNA degradation factors
5'-3' decay
Decapping complex
AT4G14990
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
827158
NCBI-ProteinID:
NP_567452
TAIR:
AT4G14990
UniProt:
Q94C98
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Position
4:complement(8565622..8569871)
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AA seq
787 aa
AA seq
DB search
MERSDSRDFYNFAKTSSDNNSALFDASQYEFFGQSLEEVELGGLDDDGTVRGHVDDEEYH
LFDKREGAGLGSLSDMDDLATTFAKLNRNVTGPKHLGVIGDRGSGSFSRESSTATDWTQD
NEFTSWLDQHTVEEQVQEASWSSQPQSSPNSNSLYRTSSYPQQQTQLQHYSSEPIIVPES
TFTSFPSPGKRSQQSSPSHIHRAPSLPGGSQSNFSAPNASPLSNSTFHLSGLSHGPSHYG
NNLARYASCGPTLGNMVQQPPHWVTDPGLLHGDHSALLHSLMQQQHLQQLPPRNGFTSQQ
LISLQQRQSLAHLAALQSQLYSSYPSPSHKALFGVGEVREHKHKSSHRSRKNRGGISQQT
SDLASQKSESGLQFRSKYMTSEEIESILKMQHSNSHSSDPYVNDYYHQARLAKKSSGSRT
KPQLYPSHLKDHQSRSRNSSDQQPQVHVDALGKITLPSICRPRALLEVDSPPSSGHKHLE
DEPLVAARVTIEDAFGVLIDIVDIDRTLQFNRPQDGGAQLRRKRQILLEGLATSLQLVDP
FSKTGQKTGLTTKDDIVFLRITTLPKGRKLLTKYLQLLVPGTEIARVVCMAVFRHLRFLF
GGLPSDSLAAETIANLAKAVTVCVQAMDLRALSACLAAVVCSSEQPPLRPIGSSSGDGAS
VVLVSLLERAAEVIVAVVPPRVSNHGNPNDGLWRASFDEFFSLLTKYCRSKYETIHGQNH
DNAADVLELAIKREMPAELLRASLRHTNEDQRNFLLNVGRSASPVSESTTTRASASGGQI
NSEFVRG
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atggagagatctgattctagagatttctacaacttcgctaagacttcttctgataacaat
agtgcactctttgacgcatctcaatatgagttctttggtcaaagtcttgaagaagtcgaa
ttgggtggtcttgatgatgatggtactgttcgtggacatgttgatgatgaagagtatcac
ttgtttgataaaagagagggtgctggtttaggatcattatctgacatggatgatcttgcc
acaacttttgcaaagctgaacagaaatgttaccgggcccaaacaccttggagtaattggt
gacagaggatcagggtccttttcaagagaaagttctactgctacagattggactcaggat
aatgagttcacaagctggttggatcagcacacagttgaagaacaagttcaggaagctagt
tggtcttcacagccacaatcatctcctaattcaaattctctgtataggacatcctcatat
cctcagcagcaaacacagctacaacattacagtagcgaaccgattatcgtaccagaatcg
acgtttacatcttttccttcgcctggaaaaagatctcaacagtcttccccgagccatatt
catcgtgctccttctcttcctggtggtagtcagtcgaacttttcagctccaaacgcctct
ccgttgtcgaattctactttccatctctcgggattgtcacatggaccgtcgcattatggt
aataatttggctagatatgcctcatgtggtcctactcttggtaacatggtgcaacaacct
cctcattgggttaccgaccccggccttctccacggtgatcattccgcgttgttacacagt
ctaatgcaacagcaacatctccaacaactgcctcctcggaatggttttacttcacaacag
ttgatatctcttcagcagagacaatctttagctcatcttgctgcattacaatctcagcta
tatagttcttatccttctccatcacataaagctcttttcggggttggtgaagtaagggaa
cacaaacataagtcgtctcatcgaagtcgaaagaacagaggtggtatctctcaacagaca
tcagatttagctagccagaaaagcgaaagcggattgcagtttagatcaaagtacatgact
tcagaagagatagagagtattctcaagatgcagcattctaattcacacagtagtgaccct
tatgtcaatgattattaccaccaagctcggcttgcgaaaaagtcatccggatcaagaaca
aagcctcagttgtatccttctcatttgaaggatcaccaatctcggtcgcggaatagttct
gatcagcaaccacaagttcatgttgatgctcttggaaagattacacttccttctatttgc
agaccacgagctctactcgaggttgactctcctcctagctctggtcataagcatcttgaa
gatgagcctcttgttgcagctagagtcacaattgaagatgctttcggagttcttatcgat
atagttgacattgataggactcttcaattcaaccggccacaagacggtggtgcacagctc
aggagaaaacggcagatccttcttgaaggattagcaacttcacttcaacttgttgatcct
tttagcaaaactggtcagaaaaccggattgaccacaaaggatgatatcgtgtttctccgc
ataacgactcttcctaagggtcggaaattgctgacaaagtatctacagcttcttgttccg
ggtactgagatcgcgcgggttgtctgtatggctgtattccgccacctgaggtttctattc
ggtggcctaccgtcagatagccttgcagcagagacgatagctaatcttgctaaagcagtt
acggtttgtgttcaagcaatggacctccgagcattgagtgcttgtcttgcagctgttgtt
tgctcgtcagaacagccacctctccgtccaataggaagttcttccggggacggagcatcg
gttgtcttggtatctcttcttgagagagctgctgaagtaatagtggcggtggttccaccg
cgtgtcagcaaccacgggaatccgaatgatggactctggagagcctcgtttgatgagttc
ttctctcttcttactaaatattgcaggagcaagtacgagacaatccatggtcagaaccac
gacaatgcagctgatgtgttggagttagctataaagagggaaatgcctgccgagctttta
cgtgcgagtcttcgtcatactaatgaagaccagcggaacttcttacttaacgttggtcgt
agtgcatcgccagttagcgagtcgacaacaacccgtgcaagtgcaagtggtggtcagatt
aactctgaatttgtgaggggttaa
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