KEGG   Arabidopsis thaliana (thale cress): AT4G21100
Entry
AT4G21100         CDS       T00041                                 
Symbol
DDB1B
Name
(RefSeq) damaged DNA binding protein 1B
  KO
K10610  DNA damage-binding protein 1
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03420  Nucleotide excision repair
ath04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    AT4G21100 (DDB1B)
  09124 Replication and repair
   03420 Nucleotide excision repair
    AT4G21100 (DDB1B)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ath04121]
    AT4G21100 (DDB1B)
   03400 DNA repair and recombination proteins [BR:ath03400]
    AT4G21100 (DDB1B)
Ubiquitin system [BR:ath04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Adoptor protein
     AT4G21100 (DDB1B)
DNA repair and recombination proteins [BR:ath03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      AT4G21100 (DDB1B)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      AT4G21100 (DDB1B)
SSDB
Motif
Pfam: Beta-prop_RSE1_2nd Beta-prop_RSE1_1st CPSF_A
Other DBs
NCBI-GeneID: 827857
NCBI-ProteinID: NP_193842
TAIR: AT4G21100
UniProt: O49552
LinkDB
Position
4:complement(11258759..11265605)
AA seq 1088 aa
MSVWNYAVTAQKPTCVTHSCVGNFTSPQELNLIVAKSTRIEIHLLSPQGLQTILDVPLYG
RIATMELFRPHGEAQDFLFVATERYKFCVLQWDYESSELITRAMGDVSDRIGRPTDNGQI
GIIDPDCRVIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCTKPTIAVL
YQDNKDARHVKTYEVSLKDKNFVEGPWSQNNLDNGADLLIPVPSPLCGVLIIGEETIVYC
SANAFKAIPIRPSITKAYGRVDLDGSRYLLGDHAGLIHLLVITHEKEKVTGLKIELLGET
SIASSISYLDNAVVFVGSSYGDSQLIKLNLQPDAKGSYVEILEKYVNLGPIVDFCVVDLE
RQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLKSSIDEAFDTFLVVS
FISETRILAMNIEDELEETEIEGFLSEVQTLFCHDAVYNQLVQVTSNSVRLVSSTTRELR
NKWDAPAGFSVNVATANASQVLLATGGGHLVYLEIGDGTLTEVKHVLLEYEVSCLDINPI
GDNPNYSQLAAVGMWTDISVRIFVLPDLTLITKEELGGEIIPRSVLLCAFEGISYLLCAL
GDGHLLNFQLDTSCGKLRDRKKVSLGTRPITLRTFSSKSATHVFAASDRPAVIYSNNKKL
LYSNVNLKEVSHMCPFNSAAFPDSLAIAREGELTIGTIDDIQKLHIRTIPIGEHARRICH
QEQTRTFAISCLRNEPSAEESESHFVRLLDAQSFEFLSSYPLDAFECGCSILSCSFTDDK
NVYYCVGTAYVLPEENEPTKGRILVFIVEEGRLQLITEKETKGAVYSLNAFNGKLLASIN
QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIAVGDLMKSISLLIYKHEEGA
IEERARDYNANWMTAVEILNDDIYLGTDNCFNIFTVKKNNEGATDEERARMEVVGEYHIG
EFVNRFRHGSLVMKLPDSDIGQIPTVIFGTVSGMIGVIASLPQEQYAFLEKLQTSLRKVI
KGVGGLSHEQWRSFNNEKRTAEAKGYLDGDLIESFLDLSRGKMEEISKGMDVQVEELCKR
VEELTRLH
NT seq 3267 nt   +upstreamnt  +downstreamnt
atgagcgtatggaactacgccgttacggctcagaaaccgacctgtgtcactcactcttgc
gtcgggaacttcacaagtcctcaagaactcaatctcattgttgcgaaatccactcgaatc
gagatccatctgctttctccacagggacttcagactatactggatgttcctctatatggg
agaatcgcaactatggaattgttccgtccccatggtgaagcacaagactttttgtttgtt
gcaactgaaagatataaattctgtgttcttcaatgggattatgagtcctctgagcttatt
acaagggcaatgggggatgtttctgatcgtataggccgaccgacagacaatggtcagatt
ggtataattgatcctgattgcagagtaattggtctgcatctgtatgacggcttgtttaag
gtcattccatttgacaataaaggacagctcaaggaagcctttaacataaggctggaggag
ttgcaggtcctagatatcaagtttctgtatggatgcacgaaaccaacaattgcagtactt
tatcaggacaacaaagatgctcgtcatgtcaaaacatatgaagtttctctaaaggataag
aactttgtcgaaggtccatggtcacagaacaatctcgacaatggtgctgacttattgatc
cctgtaccttcacctctatgtggcgtcctcatcattggggaagaaacaattgtctattgt
agtgccaatgcattcaaagcaataccaataagaccttccatcacaaaagcatatggaaga
gttgatcttgatggttctaggtatcttcttggtgaccatgccggactgattcacctgctt
gttataacccatgagaaagaaaaggtcactggcctcaaaattgagcttttgggtgaaacc
tctattgcatcttccatctcgtatctggacaatgctgtcgtctttgtcggttcaagctat
ggagattcacagcttattaagctaaacctgcaaccggatgcaaaagggtcatatgtagaa
attttagaaaagtatgtcaacttggggcctattgtcgatttttgtgtagttgaccttgag
agacaggggcaaggtcaggttgtaacttgctctggagcatacaaggatggttctcttcgc
atagttcgcaatgggataggaataaatgaacaggcgtccgtggaacttcaaggcatcaaa
ggaatgtggtcgttgaaatcgtcaattgatgaagcctttgatacattccttgtagttagt
tttatcagtgaaactcgtatactagccatgaatatagaggatgaactggaagaaacagag
attgagggttttttgtctgaagttcagactttattttgccatgatgctgtctacaaccaa
cttgtacaggttacctcaaattctgttagattagttagttctacaactagagagttgcgg
aataaatgggatgccccagctggattctctgttaatgttgcaactgcaaatgcgagccag
gttcttttggccactggaggtgggcatttggtctatctagaaattggggatgggacattg
acggaagtgaaacatgtcctgttggagtacgaggtttcttgtcttgacataaaccccatt
ggtgataatcctaattacagtcagctagctgccgtcgggatgtggactgatataagtgtg
aggatttttgtgctaccagacttgactcttattactaaggaggaactaggaggagagatc
attccccgatctgttcttctttgtgcatttgaagggatatcttacttgctctgtgctctt
ggagacggtcatctcttaaacttccagttggatacaagttgcgggaaattaagagatcgg
aaaaaagtatcactggggactcgacctataactctgcgtactttttcatctaaaagtgca
acgcatgtcttcgctgcatcagatagaccagctgttatatatagcaacaacaagaagcta
ttatacagcaacgtgaatctgaaagaagttagtcatatgtgtcccttcaactctgctgct
tttccagacagtctagcaattgcaagggagggcgaacttacaattggtaccatcgatgac
attcagaagcttcacatacgcaccattcccattggagagcatgctcgtcggatatgtcat
caggaacaaacacgaacatttgctatctcctgtttgagaaacgaaccaagtgcagaagaa
tctgaatcgcattttgtccgtctgctggatgcccaaagtttcgagttcttgtcaagttac
cctttggatgcctttgaatgtggttgctccatattgagctgctcgtttacagacgacaaa
aatgtctattattgtgttggtacagcatatgttttgcccgaggaaaatgaaccaactaag
ggaaggatacttgtgtttatagttgaagaaggaagattgcagcttatcacagagaaggaa
accaagggagctgtttattctctcaatgccttcaatggcaaacttcttgcttctattaat
caaaagattcagttgtataagtggatgctgcgggatgatggcactcgcgagctgcaatct
gaatgtggacatcacggtcacatactagctctctacgtgcagacccgtggagacttcatc
gctgttggtgatctcatgaaatcaatctctttattgatctacaagcacgaggaaggtgcg
atcgaggagagagctcgggactataatgcaaactggatgacggcagttgagatactcaat
gatgacatctacctcggtactgataattgcttcaacatattcaccgtaaagaagaacaac
gaaggtgctacagatgaagaacgtgctcgtatggaggtggttggtgagtatcacataggg
gaatttgtgaaccgattccgccatggctctcttgtcatgaagctgcctgattcagatatt
ggtcagataccgacagtcatatttggcactgtcagtgggatgattggagtgatagcgtct
ctgcctcaagaacagtatgcgtttctagagaaactgcagacgagtctgaggaaagtgatt
aaaggagttggtggtctaagccacgagcagtggagatcgttcaacaacgagaaaagaact
gcggaagcaaagggttacttggatggagaccttattgaatcgttcttggatttgagcaga
ggtaagatggaggagatctccaaaggtatggatgttcaagtggaagagttgtgcaagaga
gttgaagaactcactaggcttcactga

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