Arabidopsis thaliana (thale cress): AT4G28080
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Entry
AT4G28080 CDS
T00041
Name
(RefSeq) Tetratricopeptide repeat (TPR)-like superfamily protein
KO
K03255
protein TIF31
Organism
ath
Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03012 Translation factors [BR:
ath03012
]
AT4G28080
Translation factors [BR:
ath03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
AT4G28080
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_12
TPR_10
eIF3_p135
TPR_NPHP3
CLU_N
TPR_2
CLU
TPR_8
TPR_MalT
TPR_9
Motif
Other DBs
NCBI-GeneID:
828923
NCBI-ProteinID:
NP_194537
TAIR:
AT4G28080
UniProt:
F4JKH6
LinkDB
All DBs
Position
4:complement(13948603..13958107)
Genome browser
AA seq
1819 aa
AA seq
DB search
MAPKAGKTKPHKSKGEKKKKEEKVLPTVIEISVETPDESQVTLKGISTDRILDVRKLLAV
HVQTCHFTNFSLSHQVRGTKLKDSVDIVSLKPCHLTIVEEDYTEEQATAHIRRLLDIVAC
TTAFGPSKPPVSRTLPKDSEKKESGSTDGDSPTEKDAGDSNSGLSPKPKESEKKSVGACE
AQSAEGAAKSDIDMCPPTRLGQFYEFFSFSYLTPPIQYIRRSVRPSKEDKGLDDLFQIDI
KVSSGKPFTVVASRTGFYPPGKQQLLCHSLVELLQQISRPFDAAYDALMKAFIEHNKFGN
LPYGFRANTWVVPPVVADSPSTFPSLPVEDETWGGDGGGVGRSGKYDKRKWAKEFAILAA
MPCKTPEERQVRDRKAFLLHSLFVDVSVFKAVEIIKKIVENNQCSLKDPAALGFHEERIG
DLIVRVARDDPDASAKLDRKSDGTQVLEISQEELAQRNLLKGITADESATVHDTSTLGVV
VVRHCGCTAIVKVASEFKLNDGHILQDIDIEDQSEGGANALNVNSLRTLLHKSSTPSSLA
QRSPNADSEQIRVAKSLVRKVIEDSLKKLEIEPSRYSKPIRWELGACWVQHLQNQASSKS
ESKKTEDPKPEPAVKGLGKQGALLKEIKRKIDVKANKTEQGKEAPANDTDNTSETEDQKE
LEKQNEEIEKMWKELVTETAYQRLKESETGFHLKSPKELIEMARKYYTDTALPKLVADFG
SLELSPVDGRTLTDFMHTRGLQMHSLGRVVELAEKLPHVQSLCVHEMIVRAYKHILQAVV
AAVENTADVATSIATCLNVLLGTPSDTESVYDEKIKWTWVETFISKRFGWDWKHEGCQEL
RKFSILRGLSHKVGLELVPKDYEMDTSYPFKKFDIISMVPVYKHVACSSADGRTLLESSK
TSLDKGKLEDAVNYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKA
LDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAAT
YINVAMMEEGMKNAHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMDAYSLSV
QHEQTTLQILQAKLGPEDLRTQDAAAWLEYFESKALEQQEAARNGTPKPDASISSKGHLS
VSDLLDYITPDSGIKARDAQRKARPKVKGKPGQSPGPVSEENQKDDEILSPAHLTGESSS
DKENKSETKSEEKKVENFDLEQSKPQDQLKLVKPEATVHEDDDSDEGWQEAVPKNRFSSG
RRTRPSLAKLNTNFMNVTQQPSRSRGKSTNFTSPRTSSNELSISVAGSTSSPASKMFVKS
PLNKKQNNSSVVGERPVNDKSALASSACTEQINKPTPMLSPVSVKAGKLFSYKEVALAPP
GTIVKIVAEQLPEETKAPQNLDAAKIAVDGPEKVNAQDAESENKHVATETEAENTDCNEQ
GRVVVGGSELTSSPKEIKNVEVEKAAEKAFPIETAVSNARPGKSKSAQMAEDSDTCLLNK
SPTANDSNGSESVIGVKLQKDLCDAELKTVDGETENLPNGDSSPKSSVAADGEKQDACEA
QKEMSKKLSASAPPYTPTTIPIFGSIAVPGFKDHGGILPSPLNMPPMLPINHVRRSTPHQ
SVTARVPYGPRLSGGGYNRSGNRVPRNKPSFPNSTESNGEANQFNGPRIMNPHAAEFIPS
QPWVSNGYPVSPNGYLASPNGAEITQNGYPLSPVAGGYPCNMSVTQPQDGLVSEELPGAG
SSEEKSGSEEESNNDKNAGEDDEAVGQETTDTPENGHSTVGEVETTSHETCDEKNGERQG
GKCWGDYSDNEIEQIEVTS
NT seq
5460 nt
NT seq
+upstream
nt +downstream
nt
atggctcctaaagcggggaaaacaaagccacacaagagtaaaggagagaagaagaagaag
gaagagaaagttttgcccactgtcattgagataagtgttgaaacaccagatgaatcccaa
gtgacactcaagggtatctccacagacagaatcttagatgtgaggaagctcttggcggtc
catgttcagacatgccacttcaccaacttctctctctctcaccaggtgcgtggcactaaa
ctcaaggattccgttgacatcgtatcgctcaagccctgccacctcactattgttgaagag
gactatacggaggagcaagccaccgcgcacatacggcggctcctcgacatcgtcgcttgc
accaccgcatttggtccgtcgaaacccccggtgtctcgtacgcttcctaaggattctgaa
aagaaggagtcaggctcgacggatggagattctccgaccgaaaaagatgccggtgattca
aattccggtctcagccctaaacctaaggaatcagagaagaaatccgtcggcgcatgtgag
gctcagtcggcggaaggagcggccaagagtgacattgacatgtgcccaccgactcgtctc
ggacaattttacgaatttttctcattctcctaccttactcctccgattcaatacatcaga
aggtctgttcgtccatccaaagaggataaaggattagatgatttgtttcaaatcgatatt
aaagtttcaagtgggaagccgttcacggttgttgcttcaagaacaggtttttatccacct
gggaaacagcaacttctgtgccactccttggttgagctgctgcaacagataagccggcca
tttgatgcggcttatgacgctcttatgaaagctttcattgagcacaataagtttggcaac
cttccttatggtttccgggcaaacacttgggtagttcctccggttgttgcagatagtcca
tctacttttccgtcacttccagtggaggatgagacatggggaggggatggtggtggggta
ggccggtctggaaagtatgacaaaagaaagtgggctaaggaatttgccattttggcagca
atgccttgtaaaacacctgaagagagacaggttcgagataggaaggcctttctactccac
agtttatttgtcgacgtttcagttttcaaagcagtggaaataataaaaaagatagtagag
aataatcaatgctcacttaaggatcctgctgcattgggtttccatgaagaaagaataggt
gatttgatcgtaagggtggctagagatgatcctgacgccagtgccaagcttgaccggaag
agcgatgggacccaggttctggagatttctcaggaagagcttgctcaaaggaatttgctt
aaagggatcactgctgatgagagtgcgacagttcatgatacgtctactttgggggtggtg
gttgtaagacattgtggttgtacagccattgtaaaggttgcttctgaatttaagttgaat
gatggccatatcctacaggatattgacattgaagaccaatccgaaggaggtgcaaatgca
ctgaatgtaaatagcttgagaactctattgcacaagtcgtcaacgccttctagcttagca
cagagatcaccaaatgcagactcggaacaaatacgtgtggctaagtctcttgtgaggaaa
gtaatcgaggatagtttgaagaaattggagattgagccctcaagatatagtaagccgata
aggtgggaattaggagcctgttgggtgcaacatctgcaaaatcaagcttcaagtaaaagt
gagtctaagaaaactgaagatcccaagcctgaaccagctgtcaagggtcttggaaagcaa
ggtgcactgctgaaggagataaaaaggaagatcgatgtgaaagctaacaagactgaacag
ggcaaagaggcccctgctaatgacactgacaatacatcagagactgaggatcaaaaggaa
ctcgagaaacaaaacgaggaaatagaaaagatgtggaaagaactggtgacagaaactgca
tatcagcgccttaaagaatcagaaactggtttccatctcaagtcacccaaagagctgatt
gaaatggcccgcaaatattacactgacactgctcttccaaaactggtggcagactttgga
tctcttgaactctcacccgtcgatggaagaactctgacagactttatgcacaccagaggc
ttgcaaatgcattccttgggaagagtggtcgagctggctgaaaagcttcctcatgtgcaa
tccctctgtgttcatgaaatgattgttcgggcgtacaagcatatactgcaggctgttgta
gcagctgttgaaaacaccgctgatgtggccacctcaatagcaacatgcttaaatgtccta
ttggggacaccgtctgacactgagagtgtatacgatgaaaagattaagtggacctgggtg
gaaacgttcatttccaagaggtttgggtgggattggaagcatgaaggctgccaggaactg
agaaaattttccattcttagaggactgtcacacaaggttggactggagcttgttcctaaa
gactatgagatggacacgtcttatccttttaagaagtttgatattatcagtatggttcct
gtgtataagcacgtagcatgttcatccgcagatgggcgcactttgttggaatcatccaaa
acctccttagataaaggcaaactggaggatgctgtcaattatggcaccaaggcattggcc
aagcttgtagctgtgtgcggcccatatcatagaatgaccgctggagcgtatagtcttctc
gctgttgtgctgtaccatactggggattttaaccaggctaccatttatcagcagaaagca
ctcgacataaatgaaagggaacttggacttgatcacccagacacaatgaaaagctacggc
gacctggctgtcttctattatcgtcttcagcacacagagttagccttgaagtatgtcaac
cgtgccttgtatcttttgcatctaacatgtggaccatcacatccaaatacagctgccact
tatataaacgtagcaatgatggaagaaggtatgaagaatgcccatgtggctttaagatac
cttcatgaagcattgaaatgtaaccagagactacttggagctgatcatatccagactgct
gcaagctaccatgccattgctattgctctttctctgatggacgcatactccttgagcgtt
caacatgagcagaccactctacagattctacaagcaaaactaggccctgaggatcttcgg
acacaggatgcggctgcgtggcttgaatatttcgagtccaaagctctggaacagcaagaa
gctgcacgaaatggtactcccaagccagacgcctctatttccagcaaaggccatctcagt
gtatcagacctgttggattatataaccccggattctggtattaaagcaagggacgctcaa
aggaaagctcgcccaaaggtcaagggaaagccaggtcaaagtccaggaccagtgtcagaa
gaaaatcagaaagatgatgaaattttgagtccggctcatctcactggggagagttcaagt
gataaagagaacaaatccgaaacaaaatctgaagaaaaaaaggttgaaaattttgatttg
gaacaatcaaaacctcaagaccagctgaagctggttaagcccgaagccacggtccacgaa
gatgatgattctgacgaaggatggcaagaagctgtccccaaaaatcgtttttcttctggg
cgtagaacacggcccagcctggcaaagctgaacaccaacttcatgaacgtgacccagcag
ccatcaagaagcagaggaaaatccaccaatttcacatccccaagaaccagttctaatgag
ctttcaatttctgttgctggttccacttcttccccagcctcgaagatgtttgtaaagagc
ccattgaacaaaaagcaaaacaattccagtgtagtgggagaaagaccagtcaacgataaa
tcagccctggcaagctcagcttgcactgaacagatcaacaagccaactccgatgttgagt
cctgtgagtgtcaaagctggaaaactgttttcctataaggaggttgcactggctccccct
ggaacgattgtaaaaatagttgcagagcagttgccagaagaaacaaaggccccacagaat
ttggatgcggcaaaaattgcagtagatggtcctgaaaaagttaatgctcaggatgctgag
agcgagaataagcatgtggctacagaaacggaagcggaaaacactgattgcaatgaacaa
ggaagagttgttgttggtggatcggagttgactagttctccaaaggaaatcaagaatgtg
gaggtcgaaaaggcagctgaaaaagcatttccaatagaaacagccgtatcaaatgcaaga
ccaggaaaatctaagagtgcacaaatggctgaggattcagatacatgtctcttgaataag
tcaccaacagcaaatgattcaaatggcagtgaatcagttattggagtgaagcttcaaaag
gatttatgtgatgctgaactgaaaacagtagatggtgaaaccgaaaatctgcccaatgga
gactcaagcccaaagtcatcagtagctgcagatggagaaaagcaagatgcatgtgaggca
caaaaagagatgagcaagaagctctctgcttctgcaccgccgtataccccaacaaccatt
ccaatatttggatcaattgcagttccaggattcaaagaccacggtggaatcctcccctct
ccattgaatatgccaccaatgcttcctattaaccatgtccgcagatcaactcctcatcag
tctgtaacagctcgagttccttatgggcctagactctctggtggtggttacaaccgatct
ggaaacagggttccgcgtaacaaaccaagcttccccaatagcaccgagtccaatggtgag
gctaatcaattcaatggcccaagaataatgaacccccatgctgctgagttcataccgagt
caaccttgggtttctaatgggtatccagtgtcaccaaatggctatttagcatccccaaat
ggtgcagaaataacacagaatgggtaccctttgtcaccagtagcaggtggatatccgtgt
aacatgtccgttacacagcctcaggatggacttgtttcagaggaattacctggtgctgga
agctctgaggagaagagcggaagcgaagaagaaagcaacaacgacaaaaatgctggagag
gatgacgaagccgttggacaagaaactacagatacacctgaaaatggacattcgacagta
ggtgaagtggaaaccacatcacatgagacttgtgatgagaaaaatggagaacgacaagga
ggcaagtgctggggagattacagcgataatgaaatcgagcaaattgaagttacaagttga
DBGET
integrated database retrieval system
