Arabidopsis thaliana (thale cress): AT4G28450
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Entry
AT4G28450 CDS
T00041
Name
(RefSeq) WD repeat and SOF domain-containing protein 1
KO
K11806
DDB1- and CUL4-associated factor 13
Organism
ath
Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ath03009
]
AT4G28450
04121 Ubiquitin system [BR:
ath04121
]
AT4G28450
Ribosome biogenesis [BR:
ath03009
]
Eukaryotic type
90S particles
Other 90S particles
AT4G28450
Ubiquitin system [BR:
ath04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
AT4G28450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Sof1
Beta-prop_EML_2
WDR55
WD40_WDHD1_1st
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_EIPR1
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_RIG_2nd
Beta-prop_DCAF4
NBCH_WD40
WDR90_beta-prop_4th
WD40_RFWD3
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
eIF2A
Beta-prop_SCAP
PROPPIN
Beta-prop_NUP159_NUP214
Beta-prop_WDR19_1st
Beta-prop_Vps41
VID27
Motif
Other DBs
NCBI-GeneID:
828962
NCBI-ProteinID:
NP_567810
TAIR:
AT4G28450
UniProt:
Q93VK1
A0A178UZJ7
LinkDB
All DBs
Position
4:complement(14061403..14064708)
Genome browser
AA seq
452 aa
AA seq
DB search
MKIKTLSRSVDEYTRERSQDLQRVFHNFDPSLRPMEKAVEYQRALTAAKLEKIFARPFVG
AMDGHRDGVSCMAKNPNYLKGIFSASMDGDIRLWDISSRRTVCQFPGHQGAVRGLTASTD
GNVLVSCGTDCTVRLWNVPRPSLEDSSISSENFIEPSATYVWKNAFWAVDHQFEGDLFAT
AGAQLDIWNHNRSQPVQSFQWGTDSVISVRFNPGEPNLLATSASDRSITIYDLRLSSAAR
KIIMMTKTNSIAWNPMEPMNLTAANEDGSCYSFDGRKLDEAKCVHKDHVSAVMDIDFSPT
GREFVTGSYDRSVRIFPYNGGHSREIYHTKRMQRVFCVKYSCDATYVISGSDDTNLRLWK
AKASEQLGVILPREQKKHEYNEAVKNRYKHLSEVKRIVRHRHLPKPIYKAMGIIRTVNDS
KRRKEARRKAHSAPGTVVTAPLRKRKIIKEVE
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgaagattaagacgttatcaagatcggttgatgaatacactcgagaaagaagtcaggat
cttcagagggtctttcacaacttcgacccaagtcttcgacctatggagaaggccgtggaa
taccagagagctcttacagctgccaaattagaaaagatatttgcaaggccgtttgttgga
gcaatggatggtcatcgtgatggagtctcatgtatggcgaagaacccaaattacctcaaa
ggaatcttctctgcttctatggatggagatattcgcctttgggatatctcttcaaggcgt
acagtttgccaattccctggtcatcaaggtgctgtgcgtggtcttactgcatcaaccgat
ggaaatgtattggtttcatgcggaactgattgcactgttcgtttgtggaatgttcctcgt
ccttcacttgaagattctagcatttcatctgagaatttcattgagccatctgcaacctat
gtctggaagaatgctttctgggctgttgatcatcagtttgaaggtgacctttttgctacg
gccggagctcaacttgatatatggaatcataataggtctcagccagttcagagtttccag
tggggaactgactctgtaatatctgttcggtttaatcctggagagcctaatttattggct
acatcagctagtgaccggagcataaccatatatgatctccgcttgtcttctgcggcaagg
aaaattatcatgatgacaaaaacaaattcaattgcatggaaccccatggagcctatgaac
ctgacagctgctaatgaagatggaagttgctatagctttgatggtagaaagttggacgaa
gccaagtgcgtgcataaagatcatgtttctgcagtgatggatattgacttttcaccgact
ggtcgtgagtttgttacgggttcttatgatcgatctgtgagaatcttcccatacaatgga
ggacacagcagggaaatctaccatacaaagaggatgcagagagtattctgtgtcaaatat
agctgtgatgctacatatgtaatatcgggcagtgatgacaccaatctcaggctatggaag
gcaaaggcatcagagcaattgggagttattcttccaagggaacaaaagaagcatgagtac
aacgaggctgtgaagaaccggtacaagcatctttctgaggttaagcgcattgtgagacac
aggcacttgccaaaaccaatatacaaagcgatgggtatcattcgaactgtgaacgattcg
aagagaagaaaagaagcacgaaggaaagctcacagtgctccaggaacagtggtcacagca
cctctgcgcaaaagaaagatcatcaaagaagtggagtga
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