Arabidopsis thaliana (thale cress): AT4G29820
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Entry
AT4G29820 CDS
T00041
Symbol
CFIM-25
Name
(RefSeq) homolog of CFIM-25
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
AT4G29820 (CFIM-25)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT4G29820 (CFIM-25)
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
AT4G29820 (CFIM-25)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
NUDIX_2
NUDIX
Motif
Other DBs
NCBI-GeneID:
829104
NCBI-ProteinID:
NP_567835
TAIR:
AT4G29820
UniProt:
Q94AF0
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Position
4:complement(14595680..14597516)
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AA seq
222 aa
AA seq
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MGEEARALDMEEISDNTTRRNDVVHDLMVDLYPLSSYYFGSKEALRVKDEIISDRVIRLK
SNYAAHGLRTCVEAVLLVELFKHPHVLLLQYRNSIFKLPGGRLRPGESDIEGLKRKLASK
LSVNENVGVSGYEVGECIGMWWRPNFETLMYPFLPPNIKHPKECTKLFLVRLPVHQQFVV
PKNFKLLAVPLCQLHENEKTYGPIMSQIPKLLSKFSFNMMEI
NT seq
669 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaagaagctcgagcgttagatatggaggagatcagtgacaacacgacgagacga
aacgatgtcgttcatgacttgatggttgatttatacccgcttagcagctactacttcggt
tcaaaagaagctcttcgcgtcaaggacgagattatctctgatcgagtcatcagattgaaa
tccaattatgctgctcatggattgagaacttgcgttgaagctgttcttctggttgagttg
ttcaagcatcctcatgttttgcttcttcaatatagaaactccattttcaagcttcctggt
ggtcgtttgagacctggagaatcagatattgaaggtctaaaacggaaactagcatcaaag
ctatcggttaacgaaaatgtgggtgtttcgggttatgaggtaggagaatgtattgggatg
tggtggagacccaactttgagacattgatgtatcctttcttgccacctaatattaaacac
ccaaaggaatgcacaaagctttttcttgtgagattaccggtacatcaacagtttgttgtg
cctaagaacttcaaactcctcgctgttccattgtgtcaactccatgaaaatgaaaagact
tatgggccgatcatgtcgcaaattcctaagcttctttcgaaattctccttcaacatgatg
gagatatga
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