KEGG   Arabidopsis thaliana (thale cress): AT4G29830
Entry
AT4G29830         CDS       T00041                                 
Symbol
VIP3
Name
(RefSeq) Transducin/WD40 repeat-like superfamily protein
  KO
K12602  WD repeat-containing protein 61
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AT4G29830 (VIP3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ath03019]
    AT4G29830 (VIP3)
Messenger RNA biogenesis [BR:ath03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     AT4G29830 (VIP3)
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_EML_2 WD40_Gbeta Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd WDR55 EIF3I Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 Beta-prop_EML Beta-prop_RIG_2nd Beta-prop_WDR75_1st Beta-prop_EIPR1 WD40_MABP1-WDR62_1st Beta-prop_WDR19_1st WDR90_beta-prop_4th Beta-prop_Aladin Beta-prop_SCAP Beta-prop_IFT122_1st NBCH_WD40 Beta-prop_TEP1_C Beta-prop_DCAF12 Beta-prop_Vps41 WD40_RFWD3 eIF2A Beta-prop_WDR35_TULP_N Beta-prop_SPT8 Beta-prop_IFT140_1st Beta-prop_WDR41 Beta-prop_WDR11_1st Beta-prop_VPS8 Beta-prop_RIG_1st Ge1_WD40 CFAP43_N Beta-prop_NUP159_NUP214 Beta-prop_HPS5 Tricorn_2nd Beta-prop_ACSF4 Beta-prop_pof12 Beta-prop_LRRK2
Other DBs
NCBI-GeneID: 829105
NCBI-ProteinID: NP_194712
TAIR: AT4G29830
UniProt: Q9SZQ5 A0A178UYC1
LinkDB
Position
4:14597559..14599300
AA seq 321 aa
MKLAGLKSIENAHEDSVWAATWVPATEDRPALLLTGSLDETVKLWRPDELDLVRTNTGHS
LGVAALAAHPSGIIAASSSIDSFVRVFDVDTNATIAVLEAPPSEVWGMQFEPKGTILAVA
GGSSASVKLWDTASWRLISTLSIPRPDAPKPSDKTSSKKFVLSVAWSPNGKRLACGSMDG
TICVFDVDRSKLLHQLEGHNMPVRSLVFSPVDPRVLFSGSDDGHVNMHDAEGKTLLGSMS
GHTSWVLSVDASPDGGAIATGSSDRTVRLWDLKMRAAIQTMSNHNDQVWSVAFRPPGGTG
VRAGRLASVSDDKSVSLYDYS
NT seq 966 nt   +upstreamnt  +downstreamnt
atgaaactcgcaggtctgaaatcgatcgagaacgctcacgaagattccgtttgggcagcg
acgtgggttccggcgacggaagatcgaccggcgttgcttctgactggatctcttgacgag
acggtgaagttatggcgaccggacgagctggatcttgtgcggactaatactggacactct
ttgggagtagcagctttggctgcgcatccttctgggattattgcagcatcttcttcgatt
gatagctttgtccgtgtgtttgatgttgatactaatgctacgattgctgttttggaagct
cctccttctgaggtttggggaatgcaatttgaacctaagggtacgatccttgctgttgca
ggtggaagtagtgcctcagtcaagctttgggacactgcaagctggagattaatctcaact
ctatcaatcccacgcccagatgcaccaaaaccttccgataaaaccagcagcaagaaattc
gttctctcggtggcttggtctcctaatgggaaacgacttgcttgtggttcaatggatggt
acgatctgtgtttttgatgttgaccgctcaaagctacttcaccagctagaaggtcacaat
atgcctgtaaggtcccttgtgttctcccctgtagacccgagagtcctcttctctggatca
gatgatgggcatgtgaacatgcacgatgcagaagggaaaacgctgttggggtccatgtca
gggcacacgagttgggtgctgagcgttgatgctagcccagacggtggagccatagcaacc
ggctcaagcgatagaactgtgaggctatgggatcttaaaatgagagctgcgattcagaca
atgagcaaccacaatgaccaggtttggtctgtggcctttagaccaccaggtggaaccggt
gtccgggctggtcgacttgctagtgtctctgatgacaagagtgtatcgctctatgattac
tcatga

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