Arabidopsis thaliana (thale cress): AT4G32375
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Entry
AT4G32375 CDS
T00041
Name
(RefSeq) Pectin lyase-like superfamily protein
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath00040
Pentose and glucuronate interconversions
ath01100
Metabolic pathways
Module
ath_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
AT4G32375
Enzymes [BR:
ath01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
AT4G32375
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
CBM_3
Motif
Other DBs
NCBI-GeneID:
829372
NCBI-ProteinID:
NP_001320112
TAIR:
AT4G32375
UniProt:
F4JUA4
A0A654FV71
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Position
4:15629115..15631690
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AA seq
423 aa
AA seq
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MVREWGNYESKCWLCFTNVKGLVLNGSGILHPHGEAWWSSIEHSHRPRTIGFSGSSNILY
NGLTQMNSPKNHISILDCTNVTLSNFHLIAPKDSPNTDGIDIAHSNNIRIFNSSIQTGDD
CIAINGGSYDINITHVACGPGHGISIGSLGRYSVNDTVQNVKIRHCSFNGTENGARIKTW
TGGLGVAKNILYENITLTDTKYPIIIDQHYCNGGHNCTKEAMTAVKVSNVTFRYFTGTCA
NDIAIKLDCDEVTGCKDIVMEHINITSSSTKRPLTAYCQFADIISHFVSMKIKCDYYEEP
LVPVEPPQQVEPPTPTKPLAPAKPPRHVGPLMPTKPPTMFPKPLAPAKSPRHVELPMPTK
PPTMFPKPLAPAKPPRHVEPPMPTKPPTMFPKPLAPAKPPVYYAKPPAPNAQPSMLSFLS
CLI
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atggtaagggagtggggaaactacgaaagtaaatgttggttatgtttcacaaacgtgaaa
ggtctcgtcctcaatggatctgggattctccatccccatggtgaagcttggtggtcctct
attgagcactcccaccgaccacgaacaataggatttagtggaagtagtaacatcttatat
aatgggctcactcagatgaatagcccaaagaatcacatttctattttagattgcaccaac
gtaactttatcaaacttccatctaatcgcaccgaaagatagtccaaatactgatggcatc
gatattgctcattcaaacaatatccgaattttcaactcatctatccaaaccggtgatgat
tgtattgcgattaatggtggttcgtatgatatcaacataactcatgtagcatgtggtcca
ggtcatggcatcagtattggaagtttggggagatatagtgtaaacgatacggtccagaac
gtaaaaataagacactgcagcttcaatggaacagaaaatggagcaagaataaagacttgg
actggaggtctcggggtcgccaaaaatatattatacgagaatataacattaacagatacc
aaatatcctatcatcatcgatcaacattactgtaatggtggccacaattgtacaaaagag
gcgatgactgctgtgaaagtgagcaatgtgacatttagatactttacaggaacatgtgca
aatgatattgcgataaaactagattgtgatgaagtaacgggttgtaaagatatcgtgatg
gaacacatcaacatcacttcttcatctacgaaaaggcctctaaccgcatattgtcaattt
gcggatataattagtcactttgtctccatgaaaatcaaatgtgattattatgaagaacct
ttagtaccagttgaacctccacaacaggttgaacctccaacgccgactaaacctctggct
ccagctaaacctccacgacacgttggacctctaatgccgactaaacctccaaccatgttt
cctaaacctctggcaccagctaaatctccacgacacgttgaacttccaatgccgactaaa
cctccaaccatgtttcctaaacctctggctccagctaaacctccacgacacgttgaacct
ccaatgccgactaaacctccaaccatgtttcctaaaccattggcaccagctaaacctcct
gtatactatgctaaacctccagcgccgaatgctcaaccttcgatgttgtcttttctttcg
tgccttatttaa
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