Arabidopsis thaliana (thale cress): AT4G34640
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Entry
AT4G34640 CDS
T00041
Symbol
SQS1
Name
(RefSeq) squalene synthase 1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath00100
Steroid biosynthesis
ath00909
Sesquiterpenoid and triterpenoid biosynthesis
ath01100
Metabolic pathways
ath01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
AT4G34640 (SQS1)
09109 Metabolism of terpenoids and polyketides
00909 Sesquiterpenoid and triterpenoid biosynthesis
AT4G34640 (SQS1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
ath01006
]
AT4G34640 (SQS1)
Enzymes [BR:
ath01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
AT4G34640 (SQS1)
Prenyltransferases [BR:
ath01006
]
Terpene biosynthesis
Squalene/phytoene synthase
AT4G34640 (SQS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
DUF2615
Motif
Other DBs
NCBI-GeneID:
829616
NCBI-ProteinID:
NP_195190
TAIR:
AT4G34640
UniProt:
P53799
A0A5S9XYM7
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Position
4:16538189..16542024
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AA seq
410 aa
AA seq
DB search
MGSLGTMLRYPDDIYPLLKMKRAIEKAEKQIPPEPHWGFCYSMLHKVSRSFSLVIQQLNT
ELRNAVCVFYLVLRALDTVEDDTSIPTDEKVPILIAFHRHIYDTDWHYSCGTKEYKILMD
QFHHVSAAFLELEKGYQEAIEEITRRMGAGMAKFICQEVETVDDYDEYCHYVAGLVGLGL
SKLFLAAGSEVLTPDWEAISNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWGKYAD
KLEDLKYEENTNKSVQCLNEMVTNALMHIEDCLKYMVSLRDPSIFRFCAIPQIMAIGTLA
LCYNNEQVFRGVVKLRRGLTAKVIDRTKTMADVYGAFYDFSCMLKTKVDKNDPNASKTLN
RLEAVQKLCRDAGVLQNRKSYVNDKGQPNSVFIIMVVILLAIVFAYLRAN
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atggggagcttggggacgatgctgagatatccggatgacatatatccgctcctgaagatg
aaacgagcgattgagaaagcggagaagcagatccctcctgagccacactggggtttctgc
tattcgatgctccacaaggtttctcgaagcttttctctcgttattcagcaactcaacacc
gagctccgtaacgccgtgtgtgtgttctacttggttctccgagctcttgatactgttgag
gatgatactagcataccaactgatgaaaaggttcccatcctgatagcttttcaccggcac
atatacgatactgattggcattattcatgtggtacgaaggagtacaagattctaatggac
caatttcaccatgtttctgcagcttttttggaacttgaaaaagggtatcaagaggctatc
gaggaaattactagaagaatgggtgcagggatggccaagtttatctgccaagaggtagaa
actgttgatgactacgatgaatactgccactatgttgctgggcttgttggtttaggtttg
tcgaaactcttcctcgctgcaggatcagaggttttgacaccagattgggaggcgatttcc
aattcaatgggtttatttctgcagaaaacaaacattatcagagattatcttgaggacatt
aatgagataccaaaatcccgcatgttttggcctcgcgagatttggggcaaatatgctgac
aagcttgaggatttaaaatacgaggagaacacaaacaaatccgtacagtgcttaaatgaa
atggttaccaatgcgttgatgcatattgaagattgcctgaaatacatggtttccttgcgt
gatccttccatatttcggttctgtgccatccctcagatcatggcgattggaacacttgca
ttatgctataacaatgaacaagtattcagaggcgttgtgaaactgaggcgaggtcttact
gctaaagtcattgatcgtacaaagacaatggctgatgtctatggtgctttctatgatttt
tcctgcatgctgaagacaaaggttgacaagaacgatccaaatgccagtaagacactaaac
cgacttgaagccgttcagaaactctgcagagacgctggagttcttcaaaacagaaaatct
tatgttaatgacaaaggacaaccaaacagtgtctttattataatggttgtgattctactg
gccatagtctttgcatatctcagagcaaactga
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