Arabidopsis thaliana (thale cress): AT4G36690
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Entry
AT4G36690 CDS
T00041
Symbol
ATU2AF65A
Name
(RefSeq) U2 snRNP auxilliary factor, large subunit, splicing factor
KO
K12837
splicing factor U2AF 65 kDa subunit
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
AT4G36690 (ATU2AF65A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ath03041
]
AT4G36690 (ATU2AF65A)
Spliceosome [BR:
ath03041
]
Complex A
U2 snRNP components
U2 related factors
AT4G36690 (ATU2AF65A)
Complex B
AT4G36690 (ATU2AF65A)
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
829822
NCBI-ProteinID:
NP_195387
TAIR:
AT4G36690
UniProt:
O23212
A0A178UYD2
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All DBs
Position
4:complement(17293938..17297761)
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AA seq
573 aa
AA seq
DB search
MSEFEDHEGNGTVADAIYDEENGGRDGEIEDQLDSKPKRESRDHERETSRSKDREREKGR
DKDRERDSEVSRRSRDRDGEKSKERSRDKDRDHRERHHRSSRHRDHSRERGERRERGGRD
DDDYRRSRDRDHDRRRDDRGGRRSRRSRSRSKDRSERRTRSRSPSKSKQRVSGFDMAPPA
SAMLAAGAAVTGQVPPAPPTLPGAGMFPNMFPLPTGQSFGGLSMMPIQAMTQQATRHARR
VYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEAS
NAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGLTPGASGGLEGPDR
IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL
NGIKMGDKTLTVRRANQGTMLQKPEQENVLLHAQQQIAFQRVMLQPGAVATTVVCLTQVV
TEDELRDDEEYGDIMEDMRQEGGKFGALTNVVIPRPSPNGEPVAGLGKVFLKYADTDGST
RARFGMNGRKFGGNEVVAVYYPEDKFEQGDYGA
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaattcgaagatcacgagggaaacggtacggttgctgacgcgatttacgacgaa
gagaatggtggccgcgacggcgaaatcgaggatcaattggactcgaaacccaagagagaa
tcgcgtgaccatgaaagagagacatcaagaagtaaagatagagaaagagagaagggtcgt
gataaggacagagaaagagactctgaagtctctcgccgaagcagggatagagatggagag
aaaagcaaggagaggagtagagacaaagacagagatcatcgtgagcgtcatcacagaagt
agtcgtcacagggatcatagcagggagcgtggtgaaagaagagaacgtggtggtagggat
gatgatgattaccgtcgaagccgtgatcgtgaccatgataggcggagagatgatagagga
ggaagacgcagtcgtcgatctcgatctcgttcaaaggatagatctgagcgcagaacaagg
tcacgatctccatcgaaaagtaagcagcgagtcagtggattcgatatggcacctccagcc
tctgcaatgttagctgctggtgctgctgttacaggccaagttcctcccgctccaccaact
cttcctggggctggaatgtttcccaacatgtttccattgccgactggacagtcatttggg
ggactctctatgatgccaattcaggctatgacacagcaggcaactagacatgctcgcaga
gtctatgtcggtgggctttcccctacggcaaatgaacagtctgtggctacattttttagt
caagttatggctgctgttggtggaaacactgctggtccaggtgatgcagttgttaatgtc
tacataaaccacgagaagaagtttgcttttgtggagatgcgatctgttgaagaggcaagt
aacgctatgtctttggatgggattatatttgagggagctccggtgaaggtgaggagacct
agtgactataacccatctctagctgcgactcttggtccaagccagcccagtccccatcta
aacttagctgctgttggtctgactccaggtgcttctggtgggcttgagggaccagatcgt
atttttgttggtggacttccatattacttcacggaatcacaagtgagggagttgttggag
tcctttggaggcctcaagggctttgatcttgtaaaagatcgagaaacagggaactctaaa
ggatatgccttttgtgtgtaccaagatctttctgttacagatatcgcgtgcgctgcccta
aatggtatcaagatgggagataagactcttacagtgagacgtgccaaccagggaacaatg
ctacaaaagcctgaacaagagaacgtattattgcatgcacagcagcaaatagcttttcag
agggttatgttacagcctggtgcagtggcaaccactgtggtgtgtctgactcaagttgtt
actgaggatgagcttagagatgatgaggagtatggagatataatggaagacatgagacag
gaaggcggaaagtttggtgctttgaccaatgttgtgattccgcgtccaagccccaatggt
gagccagtggcaggccttggcaaggtgtttttgaagtatgccgatacagatggctcgact
agggcaagattcgggatgaatggtaggaaatttggaggaaatgaagtcgttgcagtgtat
taccctgaagacaagtttgaacagggtgattatggagcctga
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