Arabidopsis thaliana (thale cress): AT4G37950
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Entry
AT4G37950 CDS
T00041
Name
(RefSeq) Rhamnogalacturonate lyase family protein
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
ath
Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
AT4G37950
Enzymes [BR:
ath01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
AT4G37950
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Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
RhgB_N
Motif
Other DBs
NCBI-GeneID:
829951
NCBI-ProteinID:
NP_001329850
TAIR:
AT4G37950
UniProt:
A0A384L9M5
Q84W85
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Position
4:17844361..17849274
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AA seq
678 aa
AA seq
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MEYGAPGMKAGRRVLTPLFVLVFLLQGVHSQTSRNKFNIAKAGHKLASPPVTLKKVGDNQ
VVVDNGIIDVTFSSPQGLITRIKYNGLNNVLNDQIENRGYWDVVWYKPGQVSSTDYLVGT
KFDIVNQTSEQIEISFSRTFSQRGSGIPLNVDKRYIIRRGVSGIYMYAVLERLIGWPDVD
MDQIRIVFKLNTTKFDFMAVSDNRQKIMPFDTDRDITKGRASPLAYKEAVHLINPQNHML
KGQVDDKYMYSVENKDNKVHGWISSDQRIGFWMITPSDEFHACGPIKQDLTSHVGPTTLS
MFTSVHYAGKDMNTNYKSKEPWKKVFGPVFVYLNSASSRNLLWTDAKRQMVSEVQSWPYD
FVKSVDYPLHHQRGTVKGQLFVIDRYIKNVTYLFGQFAFVGLALPGEAGSWQTENKGYQF
WTRADKMGMFTIANVRPGTYSLYAWVSGFIGDYKYVRDITITPGREIDVGHIVYVPPRNG
PTLWEIGQPDRTAAEFYIPDPDPTLFTKLYLNYSNPQDRFRQYGLWDRYSVLYPRNDLVF
TAGVSDYKKDWFYAHVNRKAGNGTYKATTWQIKFNLKAVIQTRIYTLRIALAAASTIDLL
VWVNEVDSKPLFITGLIGRDNAIARHGIHGLYKLYNIDVHGKLLRVGNNTIFLTHGRNSD
SFSGVMYDYLRLEGPSGV
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggaatacggagctccgggaatgaaggctggtcgccgggttctaactccacttttcgtt
ctagttttccttcttcaaggtgttcattctcaaacatcacgaaacaaattcaacatcgca
aaagcgggacataaacttgcatctcccccggttacgcttaagaaagttggtgataaccaa
gtggtcgttgataacggtatcatcgatgttaccttctcgagtccacaaggattaataact
agaatcaagtacaatggcttaaacaatgtgttgaacgaccaaattgaaaatcgggggtac
tgggacgtagtatggtacaaaccaggacaagtatcgtcaactgattatttagtaggaaca
aaattcgatattgtaaatcaaacaagtgaacaaattgaaatttcattttcgagaacgttc
tctcaacggggctcaggaatcccattaaacgtagacaaacgatatattattcgaagaggt
gtatccggaatatacatgtacgctgtattggagaggttaataggttggcctgacgtggac
atggaccaaatcagaatcgtcttcaagcttaacacaacaaaattcgatttcatggctgtt
tccgataatcggcaaaaaataatgccttttgatacagatcgagacattaccaaaggtcgt
gccagtccattggcttacaaagaagctgttcatttgataaatccacaaaatcatatgctt
aaagggcaggtagacgataagtacatgtactcggtggaaaacaaagacaacaaagtacac
ggttggatatcgtcggaccaacgtatcggtttctggatgatcacgcccagcgacgagttc
catgcatgtgggccgatcaaacaagatctcacttctcatgtgggccccaccactctttcg
atgtttacaagtgtacattacgcgggaaaagatatgaacacaaattataaaagcaaggaa
ccgtggaagaaggtgtttggtcctgtctttgtttatctcaattctgcttcttctcgtaat
cttctctggaccgatgctaaacgacagatggtttccgaggtccaaagctggccttatgat
ttcgtgaaatctgtagattaccctcttcatcaccaaagaggaacagtcaagggtcaatta
tttgtcatagacagatacatcaaaaacgtgacgtacttattcgggcaatttgcttttgtg
ggattagcattacctggtgaagctggttcttggcaaaccgaaaacaagggatatcaattt
tggacacgagcagacaaaatgggaatgttcacaatagcgaatgtgagaccagggacgtat
agtctctacgcatgggtttctggatttatcggtgactataaatatgtgcgtgacattacc
atcacaccaggtagggagatagacgttggacacatagtgtacgtgccaccgagaaacggc
ccaacactgtgggagatcggacaaccggaccgaaccgcggcagaattctatatcccagat
ccggacccaacccttttcaccaaactttatctaaattactcaaatcctcaagatagattt
agacagtatggtctatgggatcgttacagtgttttgtatcctcgaaacgatcttgttttt
actgctggagtgagtgactataaaaaagactggttctatgcccatgtcaacaggaaagct
ggaaatgggacatataaagcaacgacatggcaaattaagtttaatttgaaagcagtgatt
caaactagaatatacacacttcgaatagctttggctgcagcctcaacaattgatctactg
gtttgggtcaacgaagttgattccaaacctctattcataactgggctaatcggtcgggat
aacgcgatcgcgaggcatgggattcatgggttgtacaaattgtacaatatcgatgttcat
ggaaagttacttagggttggtaataatactatttttcttactcatggtcggaactctgat
tctttttcaggtgtaatgtatgattatcttcgtttggaaggtccttccggagtttga
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