Arabidopsis thaliana (thale cress): AT4G38030
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Entry
AT4G38030 CDS
T00041
Name
(RefSeq) Rhamnogalacturonate lyase family protein
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
ath
Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
AT4G38030
Enzymes [BR:
ath01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
AT4G38030
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
RhgB_N
CarbopepD_reg_2
SpaA
Ig_DR_A0283-like
Motif
Other DBs
NCBI-GeneID:
829959
NCBI-ProteinID:
NP_195516
TAIR:
AT4G38030
UniProt:
A0A178V624
F4JSW8
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All DBs
Position
4:complement(17863073..17866730)
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AA seq
667 aa
AA seq
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MVSQKKIASLFICFLLLLLLPLSFSKPTRNLDGISARAPTVQQIRSRHHGTREVIVDNGI
IRVSFSNPQGLITGIKYKGIDNVLHPHLRDRGYWDITWQGTNIRQGGLDRIEGTNFRIIT
QTQEQVEISFSRTWEDGHIPLNVDKRYIIRRNTSGIYMYGIFERLPEWPELDMGLIRIAF
KLNPERFHYMAVADNRQREMPTEDDRDIKRGHAKALGYKEAVQLTHPHNSMFKNQVDDKY
QYTCEIKDNKVHGWISTKSRVGFWIISPSGEYRSGGPIKQELTSHVGPTAITTFISGHYV
GADMEAHYRPGEAWKKVLGPVFIYLNSDSTSNNKPQDLLWEDAKQQSEKEVKAWPYDFVA
SSDYLSRRERGSVTGRLLVNDRFLTPGKSAYVGLAPPGEAGSWQTNTKGYQFWTKTNETG
YFTIENVRPGTYNLYGWVPGFIGDFRYQNLVNVAAGSVISLGRVVYKPPRNGPTLWEIGV
PDRTAREYFIPEPYKDTMNPLYLNHTDKFRQYGLWQRYTELYPTHDLVYTVGVSNYSQDW
FYAQVTRKTGDLTYVPTIWQIVFHLPYVNSRGSYTLQVALASAAWANLQVRINNQNSWPF
FSTGTIGKDNAIARHGIHGMYRLYTIDVPGRLLRTGTNTIYLRQPKAQGPFEGLMYDYIR
LEEPSRA
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggtatcgcagaagaagatcgcttcgttatttatttgtttccttctgttgcttcttctt
ccactctccttttccaagccgacaaggaacttagatggaataagtgcaagagctccaaca
gtgcagcagataagaagcagacatcatgggactagagaggtgatagtggacaatgggata
atcagagtcagtttctcgaatcctcaaggacttataactgggatcaaatacaaaggaatt
gataatgttcttcatccacatctccgagatagagggtactgggacataacatggcaagga
acaaacattcgccaaggcggcttagatcgaatcgaaggaacaaattttagaatcatcact
caaacccaagaacaagtggagatatcgttctctagaacatgggaggatggtcatattcca
ttaaacgtagacaagaggtatatcatacgtagaaatacttcaggaatctacatgtacgga
atcttcgagagacttcccgaatggccagaactcgacatgggtttaattcgaatcgctttc
aaactcaaccctgagagatttcattacatggcggtggcggataatcgacaaagagaaatg
ccaacggaagatgaccgtgacatcaaacgtggtcatgccaaggctcttggttataaagag
gctgtacaattgactcatcctcataactccatgttcaaaaaccaggtggatgataagtac
cagtacacatgtgagatcaaagacaacaaagtgcacggttggatctcaaccaagtcccgt
gtcggcttttggatcatctcaccaagcggtgaatatcgctccggtggaccgatcaaacaa
gagctcacgtctcacgtcggacccacggccatcacgacttttataagcggacattatgtt
ggtgcggacatggaggcacattacagacctggtgaagcgtggaaaaaggtcttgggacct
gtttttatttacttaaactctgattctaccagcaacaataagcctcaagatttgttatgg
gaagatgctaaacaacagtccgaaaaagaagtcaaagcctggccgtacgattttgtagca
tcctctgactatctttctcgtcgagaaagaggaagcgtcactggtcgtctactagtcaac
gacagattcttgacgccgggaaaatctgcatatgtcggtttagcaccgccgggagaagct
ggttcgtggcagacaaatactaagggatatcagttttggaccaagacgaacgaaaccggt
tacttcacgatagaaaacgttagaccgggaacttacaatctgtatggatgggttcctggt
tttatcggggactttcgataccaaaaccttgttaacgtagctgcaggttcagtgattagt
ctcggtagagtcgtgtacaagccacctaggaacggtccaacgttatgggagattggtgta
ccggatcgaaccgctcgagaatactttataccggagccatacaaggatacaatgaatccg
ttatacctaaaccacaccgacaagtttagacagtacggactgtggcaacgatacacagag
ttatatccaactcatgatctcgtctacacagttggagttagtaactatagccaagactgg
ttctacgcccaagtcacaaggaaaaccggtgatttaacgtacgtaccaacaatatggcag
atcgtgtttcatcttccatacgtaaactcgcgaggcagctacacattgcaggtagcttta
gcctcggctgcatgggctaatctacaagttcggatcaataaccaaaactcgtggccgttt
ttctcaacgggtactatcggaaaagacaatgctatagcaagacatggaatccatggaatg
taccggctttataccatcgatgtgcctggaaggttgctaagaaccgggaccaacacgatt
tatcttcgacagcctaaagcacaaggaccatttgaaggtcttatgtatgattacattcgt
ctagaagagccttctagagcttag
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