Arabidopsis thaliana (thale cress): AT4G38350
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Entry
AT4G38350 CDS
T00041
Name
(RefSeq) Patched family protein
KO
K12385
Niemann-Pick C1 protein
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
AT4G38350
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
AT4G38350
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ath02000
]
AT4G38350
Transporters [BR:
ath02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
AT4G38350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NPC1_N
Sterol-sensing
Patched
NPC1_MLD
Motif
Other DBs
NCBI-GeneID:
829992
NCBI-ProteinID:
NP_001190953
TAIR:
AT4G38350
UniProt:
F4JTN1
LinkDB
All DBs
Position
4:complement(17958096..17966962)
Genome browser
AA seq
1297 aa
AA seq
DB search
MAIPTKLLLLQLFTFSLLLTANLTHSEPSNNRHSKEYCAMYDICGHRSDGKVLNCPYASP
SIQPDELFSAKIQSLCPTISGNVCCTETQFDTLRSQVQQAVPFLVGCPACLRNFLNLFCE
LSCSPNQSLFINVTSVAEVSGNLTVDGIDYHITDTFGEGLYESCKEVKFGTMNTRAINFV
GGGAKNFREWFTFIGQKAPSGFPGSPYAINFKSSIPESSAMVPMNVSVYSCGDTSLGCSC
GDCPSSPACSSPEPLPPHDEDSCSIRIGPLKVRCIELSMALVYVLLVSCFFGWAGLNRRR
NTTQPLDSSKPLLHPVEEDGINSEMKENILGVKVQRHAQLSPVQRYMAKFYRSYGSWIAR
NPSLVLFMSVAIVLALCSGLYNFKVETRPEKLWVGPESKAAEEKKFFDTHLSPFYRIEQL
ILATVPDPKSGRAPSIVTDENILLLFDIQQKVDQIRGNYSGSEVSLPDICLKPLGEDCAT
QSILQYFKMDSGTFDDYGGVEHAEYCFQHYTSSETCLSAFQAPVDPSAVLGGFSGNNYSE
VMVSELGCSVPFDCYSDVKRTLFQATAFVVTYPVNNVIGDSSNENARAVAWEKSFIQLAK
EELLPMVRSKNLSLSFSSESSIEEELKRESTADVITIAASYLVMFVYISVTLGDAPQFYT
FYISSKVLLGLSGVVLVLLSVLGSVGVFSALGVKSTLIIMEVIPFLVLAVGVDNMCILVH
AVKRQPREVSLEQRISSALVEVGPSITLASLSEVLAFAVGAFVPMPACRIFSMFAALAIM
LDFFLQITAFVALIVFDCKRSADNRIDCFPCIKVPSSSRESVEGGREPGFLERYMKEVHA
PVLGLWGVKMVVVAVFFAFALASIAISPRLETGLEQKIVLPRDSYLQDYFDSLSEYLRVG
PPLYFVVKNYNYSSESRHTNQLCSISQCNSNSLLNEISRASQASDTSYIAKPAASWLDDF
LVWLSPEAFGCCRKFTNGSYCPPDDQPPCCTAEEDICSLDGICKDCTTCFRHSDLVQDRP
STAQFREKLPWFLNALPSADCAKGGHGAYTNSVDLKGYESGVIQASEFRTYHTPLNTQGD
YVNALRAAREFSSRISNSLKIDIFPYSVFYIFFEQYLNIWTVALTNLAIAIGAIFIVCWL
ITSSAWSSAIIVLVLVMILVDLMGMMVILGIQLNAVSVVNLIMSIGIAVEFCVHISHAFL
MSSGDREHRAREALETMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGF
LHGLVFLPVILSLAGPPQLNLDIEQQQTDEASSSLLN
NT seq
3894 nt
NT seq
+upstream
nt +downstream
nt
atggcgattcctaccaagcttctcctcttacagctctttactttctcacttttactcacc
gcaaacctgacccactcagaaccaagtaataatagacattcaaaagagtattgcgctatg
tatgacatttgcggacaccgcagcgatggaaaagtccttaactgtccttatgcctcccct
tccattcagcctgatgaactgttttctgccaaaatccaaagcctttgcccaaccataagt
ggcaatgtctgttgtacagagactcagtttgacactttgaggtctcaagttcaacaggct
gtcccttttcttgtgggttgtcctgcatgcttacggaacttcttaaatttgttctgcgag
ctctcctgttctccaaatcagtctcttttcatcaacgtcacttctgttgctgaggtgagt
ggaaatttgacagtggatggtatagactatcacataactgatacgtttggagaaggcctt
tacgagtcctgtaaagaggtgaaatttggaacaatgaacacacgtgcaattaactttgtt
ggcggtggtgctaaaaacttcagagaatggtttacgtttattggtcagaaagcaccatct
ggctttcctggttcaccatatgcgatcaacttcaaatcaagcatccctgagtcatctgcg
atggtaccaatgaatgtatctgtttattcatgtggtgacacatcccttggatgctcttgt
ggtgattgcccttcctcaccagcttgctcaagtcccgaacccctgccgccccatgatgaa
gattcttgctcaattagaatcggtcctcttaaggttagatgcattgagttatcaatggca
cttgtatacgtcttgctggtgtcttgcttcttcggatgggctggtttaaatcgaagaaga
aatacgacacagcctcttgatagctcaaagccactattgcatcctgtggaagaagatgga
attaatagtgaaatgaaggaaaacatacttggtgtcaaggtgcaaagacatgctcaactc
tctcctgttcagagatatatggcaaaattttacagatcatatgggtcatggattgctaga
aatccatctcttgttctcttcatgtcagtagctattgttcttgcactctgttcaggtctc
tataatttcaaggtggaaacacgaccagaaaagttgtgggttggtcctgaaagcaaagca
gcagaagagaaaaagttctttgatacccacctttcgccattctacagaatcgagcagctt
atcttggccactgttcctgatcccaaaagtggcagggcgcctagtattgtaacagatgaa
aatattcttttgctttttgacatacaacagaaggttgatcaaattcgtggaaattattca
ggttcagaggtctctttgcccgacatatgtttgaagcctttgggagaggattgcgccact
cagagtattctgcagtatttcaagatggactctggaacttttgatgattatggaggagtt
gagcatgctgagtactgtttccagcattacacttcatcagagacgtgtttgagcgctttt
caggcgcctgttgatcctagtgcagtgttgggaggattctcggggaataattactcagag
gtaatggtttcagaacttggctgctcagtaccctttgattgttattctgacgtaaaacga
acgttatttcaggctactgcgtttgttgtaacatatccagtcaacaacgtcattggtgat
tcaagcaacgaaaacgcaagggcagtagcatgggaaaaatcgttcattcaattagcaaag
gaggagctgctacctatggtgcgatccaagaatttgagtctgtcattttcatccgaaagc
tcaatagaggaagagctgaaaagagaaagtactgctgatgttataacaatagctgcaagc
tatttggttatgtttgtttacatttcggtcacacttggagatgctccgcagttctatacc
ttttacatttcatcaaaggttttgctcggtctttcgggggttgtgcttgtcttgctttct
gtacttggatctgttggagttttcagtgcccttggagttaaatccacattgatcataatg
gaagtcattcctttcctagtcctggctgtgggagtagataatatgtgcatactggttcat
gctgtaaagagacaacctcgtgaggtttctttagagcaacgaattagctctgcacttgtt
gaagtaggtccatccataacattggcaagtttatccgaggtcttggcttttgctgttgga
gcttttgttccaatgccagcatgtcgtatcttctccatgtttgcagcattggctattatg
ctggacttctttctgcaaatcaccgcttttgttgcgctaatagtttttgactgcaaaaga
tctgcggataataggattgattgtttcccttgcataaaagttccttcatcatctcgagaa
tctgttgaaggtggaagggaacctgggtttcttgagagatacatgaaggaggttcatgca
cccgttcttggactttggggtgtaaaaatggttgttgtcgctgtattcttcgcttttgca
ctggcaagcattgccatcagcccaaggcttgaaactggcttggagcagaaaattgttctt
cctcgagactcctaccttcaagactattttgacagtctctcagagtacctcagagtgggg
ccgcctttgtattttgttgtcaagaattacaattatagctcggaatcaaggcatacaaat
cagttgtgctctatcagccaatgcaattcgaattcccttttaaatgagatatcaagagcg
tcacaggcttcagatacaagttacattgccaaaccagctgcttcttggctcgatgacttt
cttgtatggctatcaccagaggcttttggctgttgtcggaagttcactaatggcagttat
tgtcctccagatgaccagccaccttgctgcacggctgaggaagatatatgcagtttagat
gggatctgtaaagactgtaccacatgctttcgacactcagatttggttcaggatcgtcca
tctacagctcaattcagggagaaactaccctggtttctaaatgctttgccatcggctgac
tgtgcaaagggtggtcacggggcttatacgaatagcgtggatttaaaagggtatgagagt
ggtgttatacaggcatcggagttccgtacataccacactccacttaacacacaaggtgac
tatgttaatgcactgcgagctgctcgggagttcagttcaagaatatccaattccttgaag
attgacatctttccatattctgtcttctacattttctttgagcaatatctgaatatctgg
acagtagctttgacaaaccttgctatagcaatcggtgctatatttattgtttgctggtta
atcacttccagtgcctggagttcagccatcattgtccttgtgttagtgatgatactcgtg
gatctcatgggtatgatggtgattctaggcatccaactcaatgcagtttctgttgtgaat
ttgataatgtcaatcgggattgctgtagaattctgcgtgcacatatcacatgctttcctg
atgagtagtggggacagagaacatagagcgagggaggcactggaaaccatgggagcttca
gttttcagtgggatcacactcacaaaacttgttggagtgatcgtgctttgctttgcaaga
tctgagatatttgtggtgtattacttccaaatgtacttggctttggttataatcggcttc
ttgcatgggctcgttttcttacctgtcatactgagtttagctggcccgccgcagctgaac
ttggacatcgagcagcagcagacagacgaagcttcctcttccctactgaactga
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integrated database retrieval system
