Arabidopsis thaliana (thale cress): AT4G38780
Help
Entry
AT4G38780 CDS
T00041
Name
(RefSeq) pre-mRNA-processing-splicing factor-like protein
KO
K12856
pre-mRNA-processing factor 8
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
AT4G38780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ath03041
]
AT4G38780
Spliceosome [BR:
ath03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
AT4G38780
Complex C
U5 SnRNP specific factors
AT4G38780
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
830033
NCBI-ProteinID:
NP_195589
TAIR:
AT4G38780
UniProt:
Q9T0I6
LinkDB
All DBs
Position
4:complement(18101296..18111082)
Genome browser
AA seq
2332 aa
AA seq
DB search
MWNIDGTSLAPPGTDGSRMQTPSHPADHPSYTAPSNRNTPTVPTPEDAEAKLEKKARTWM
QLNSKRDHGDMSSKKHRLDKRVYLGALKFVPHAVFKLLENMPMPWEQVRDVKVLYHITGA
ITFVNEVRWVVEPIYMAQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNLLDV
DPLEAIQLELDEEEDSAVYSWFYDHKPLVKTKMINGPSYQTWNLSLPIMSTLHRLAAQLL
SDLVDRNYFYLFDMPSFFTAKALNMCIPGGPKFEPLHRDMEKGDEDWNEFNDINKLIIRS
PLRTEYKVAFPHLYNNRPRKVKLCVYHTPMVMYIKTEDPDLPAFYYDPLIHPISNSNNTN
KEQRKSNGYDDDGDDFVLPEGLEPLLNNSPLYTDTTAPGISLLFAPRPFNMRSGRTRRAE
DIPLVAEWFKEHCPPAYPVKVRVSYQKLLKCYLLNELHHRPPKAQKKKHLFRSLAATKFF
QSTELDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGN
AFHLCREILRLTKLVVDANVQFRLGNVDAFQLADGLQYIFSHVGQLTGMYRYKYRLMRQI
RMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLERWLGNLLARQFEG
RHSKGVAKTVTKQRVESHFDLELRAAVMHDVVDAMPEGIKQNKARTILQHLSEAWRCWKA
NIPWKVPGLPVAIENMILRYVKSKADWWTNVAHYNRERIRRGATVDKTVCRKNLGRLTRL
WLKAEQERQHNFQKDGPYVTADEGIAIYSTTVNWLESRKFSAIPFPPLSYKHDTKLLILA
LERLKESYSAAVKLNQQQREELGLIEQAYDNPHEALMRIKRHLLTQHSFKEVGIEFMDLY
SHLIPVYQIDPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADSEPPPLLVYKWCQGINNL
QGIWDTSDGQCVVMLQTKFEKLFEKIDLTVLNSLLRLVLDPKLANYVTGKNNVVLSYKDM
SYTNTYGLIRGLQFASFVVQFYGLVLDLLLLGLTRASEIAGPPQRPNEFMTYWDTKVETR
HPIRLYSRYIDKVHIMFKFTHEEARDLIQRHLTERPDPNNENMVGYNNKKCWPRDARMRL
MKHDVNLGRSVFWDMKNRLPRSITTLEWENGFVSVYSKDNPNLLFSMCGFEVRVLPKIRM
GQEAFSSTRDGVWNLQNEQTKERTAVAFLRADDEHMKVFENRVRQILMSSGSTTFTKIVN
KWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRVKIGLNSKMPSRFPPVIFYTPKE
IGGLGMLSMGHILIPQSDLRYSNQTDVGVSHFRSGMSHEEDQLIPNLYRYIQPWESEFID
SQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTD
FKQYQALKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHTLFKGTYFPTWEGL
FWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIY
MHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVLDQELEPLEIETVQKETIHPRKSYK
MNSSCADVLLFAAHKWPMSKPSLIAESKDVFDQKASNKYWIDVQLRWGDYDSHDIERYTK
AKFMDYTTDNMSIYPSPTGVIIGLDLAYNLHSAFGNWFPGSKPLLAQAMNKIMKSNPALY
VLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTK
PINGVIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQV
IVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLILKATEPQMALFNIYD
DWLMTVSSYTAFQRLILILRALHVNNEKAKMLLKPDMSVVTEPNHIWPSLTDDQWMKVEV
ALRDLILSDYAKKNKVNTSALTQSEIRDIILGAEITPPSQQRQQIAEIEKQAKEASQLTA
VTTRTTNVHGDELISTTISPYEQSAFGSKTDWRVRAISATNLYLRVNHIYVNSDDIKETG
YTYIMPKNILKKFICIADLRTQIAGYLYGISPPDNPQVKEIRCVVMVPQCGNHQQVQLPS
SLPEHQFLDDLEPLGWIHTQPNELPQLSPQDVTFHTRVLENNKQWDAEKCIILTCSFTPG
SCSLTSYKLTQAGYEWGRLNKDTGSNPHGYLPTHYEKVQMLLSDRFFGFYMVPENGPWNY
NFMGANHTVSINYSLTLGTPKEYYHQVHRPTHFLQFSKMEEDGDLDRDDSFA
NT seq
6999 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacattgatggtacgtccttagctcctcctggtaccgacggttcgaggatgcag
acaccttcacatcccgctgatcatccttcttacacggcgccttctaatcggaatactccg
acggttcctactcccgaggatgcagaggcgaagcttgagaagaaggcgagaacatggatg
cagctaaattccaaacgggatcatggtgatatgtcatcaaagaaacatcgacttgataaa
cgtgtatatcttggagcacttaagttcgttcctcacgcagttttcaagctcctggagaat
atgcctatgccctgggaacaggtccgggacgtgaaggtcttgtaccacatcactggagct
attacatttgtgaacgaagtacgatgggttgtggaacctatttacatggctcagtggggt
tctatgtggataatgatgagaagggagaagagggatcgtcgtcatttcaagagaatgcgg
tttccaccatttgatgatgaggagccccctctagactatgctgataacctgttggacgtt
gatcctctagaggcaattcagttggagctagatgaagaagaagattctgctgtgtactct
tggttttacgaccacaagccacttgtaaaaacaaaaatgatcaatggtccaagttaccag
acgtggaatctctcacttccaattatgtcaacccttcacaggcttgcagcccagttgttg
tctgatttggttgatcgcaactacttctacttgtttgacatgccatcattctttactgca
aaggcactgaacatgtgcataccaggcggtcctaagtttgagcctttgcatcgtgatatg
gagaaaggagatgaagactggaatgaatttaatgacatcaacaagcttataattcgatcc
cctctgcgaactgagtacaaagtagctttcccacatctgtacaataataggcccaggaaa
gtaaaactctgtgtctatcacactcctatggttatgtacataaagactgaggatcctgac
cttcctgccttttattatgatccattaattcaccccataagtaactctaataacactaat
aaagaacagcgcaaaagtaatggttatgatgatgatggggatgactttgtgttaccagaa
ggactggaacctttgctaaataactcgccactctacactgacactacagctcctggcatt
tcattgttgtttgcccctcggcctttcaatatgaggtctgggaggactcggcgggctgaa
gatataccccttgttgcagagtggtttaaggagcactgtcctccagcatatcctgtcaaa
gttcgggttagttaccagaagcttttgaaatgttatctactgaatgagctgcaccataga
ccccctaaggctcagaagaagaagcatttgtttcgatctcttgcagctacaaagtttttt
cagagcaccgaactggattgggttgaagtgggtctgcaagtctgccggcaggggtataat
atgctgaacctgttgattcacaggaagaatttgaactacctgcaccttgattataacttc
aacctcaagcctgtgaaaactctgacaaccaaggaacgaaagaagtcgcgttttggaaat
gctttccatctctgccgtgagatcctccggctgacaaaacttgtagttgatgcaaatgtc
cagttccgacttggtaatgttgatgcctttcaattggctgatggcctgcaatatattttc
tcccatgttgggcaattgacaggtatgtatcgttataagtacaggcttatgagacaaatc
aggatgtgcaaggatttgaaacacttgatctattaccgtttcaatactggtcctgtgggt
aaaggaccagggtgtggattttgggctccaatgtggagggtatggttgtttttccttcgc
ggaatagttcctcttctagaacgatggttagggaatctgcttgcacgtcaatttgagggg
cgtcactcaaagggagtggccaaaacagtcacaaaacagagagttgaaagccattttgat
ttggagcttcgagctgctgtcatgcatgatgttgttgatgcaatgccagagggtattaag
caaaataaggcgcggacgatattgcagcaccttagtgaggcatggcggtgttggaaagct
aatataccatggaaggtccctggattacctgtggcaattgagaatatgatcctccgatat
gtcaagtctaaagctgattggtggacaaatgttgctcactacaatcgtgaacgtatcaga
agaggggctactgttgataagacagtttgtagaaagaatcttggacggttgacccgtctt
tggctcaaggcagaacaggaacgacaacataattttcagaaagatggtccatatgtcaca
gcggatgaaggaattgcaatttatagcaccactgtaaattggctggaatctagaaaattt
tcagcaatcccattccctccattatcatataaacatgacacaaagttgcttatcttggcc
cttgagagactgaaagaatcatatagtgcagctgtgaagttgaatcaacagcagagagaa
gagcttggtttaattgaacaagcttatgacaatcctcatgaagctctgatgcgaataaag
cgtcatcttctcactcagcatagcttcaaagaagttggcatagagtttatggatctatat
agccatttgattccagtctatcaaattgatcccctggagaaaattactgatgcttatctt
gatcagtatttgtggtatgagggtgacaagcgccacttgtttcccaattggattaagcct
gcagactcagagccgccaccgctcctggtttacaaatggtgtcaaggtatcaataatttg
caaggcatatgggacactagtgatggtcagtgtgtagtgatgctccagacgaagtttgaa
aaactctttgagaagattgatttgacagtgttgaacagccttcttcgtttggttcttgat
cccaagcttgcaaactatgtgactggcaagaataacgtggtgctgtcttacaaggatatg
agctatactaatacgtatggactcattaggggactgcagttcgcatcgtttgttgttcag
ttttatggactagtgttagatcttttgctccttggtttgactcgagcaagtgaaattgcc
gggccaccgcagaggcctaatgagtttatgacctactgggatacaaaagttgagacacgc
catcccataagactgtattctcggtatatagacaaagtgcatataatgtttaaatttacc
catgaagaggctagggatcttattcaacgtcatctcaccgagcgtcctgatcccaacaat
gaaaacatggtgggatataacaataaaaaatgctggccaagagatgcaaggatgaggtta
atgaaacatgatgtcaatcttggtagaagtgtcttctgggatatgaagaatcgtcttcca
cggagcatcacaaccttggagtgggagaatggcttcgtctccgtgtacagcaaggataat
ccaaacttgcttttcagcatgtgtggatttgaagtccgcgtgcttccaaaaatcaggatg
ggtcaagaagcttttagcagcacaagggatggtgtctggaatctgcagaatgaacaaact
aaagagaggactgcagttgcttttctgcgggctgatgatgaacacatgaaggtgtttgag
aatcgtgtgaggcagattcttatgtcgtcagggtcaaccacatttaccaaaatcgtcaat
aaatggaatacagctctgataggcctcatgacttacttccgtgaagccactgtgcatacg
caagagctcttggatctgcttgttaaatgtgaaaataaaatccaaacgagggttaagatt
gggctaaactcaaagatgcctagtcgatttcctcctgttatcttctacactccgaaagaa
attggcgggcttgggatgttgtctatgggtcatattttgatcccacaaagtgaccttcgg
tacagcaaccagacagatgttggtgtaagccatttcaggagtggaatgagccacgaggag
gatcaactgattcctaatctttaccgttacatacaaccatgggaaagcgaatttattgat
tcacagcgggtgtgggcagagtatgctttgaagaggcaggaagctcaggcccaaaataga
cgtctgacgctggaggatctggaagactcttgggataggggaattccgcgtataaatacg
ctgttccagaaggataggcacactttagcatatgataaaggttggagggtccggaccgac
ttcaaacagtaccaagccctgaaacaaaatcctttctggtggacacaccagaggcatgat
ggtaaattgtggaacttgaacaattaccgaactgatgtcatccaagctcttggaggtgtt
gagggtattcttgagcacaccttatttaaaggaacatactttccaacttgggagggtctt
ttttgggagaaggcatctggttttgaggagtctatgaaatataagaaactgacaaatgca
cagaggtctggtctgaaccagattccgaatagaagattcacgctctggtggtcgccaaca
attaatcgagcgaatgtgtatgtgggtttccaagtgcagttggatttgacaggaatatat
atgcacggaaagattcctactcttaaaatatctttgattcagatattccgtgctcatttg
tggcaaaaaatccatgagagtgttgttatggacctttgccaagtactggatcaagagttg
gaacctttggagatagaaactgtgcagaaagagacaattcatccacggaagagttacaaa
atgaatagctcttgtgctgatgttcttctgtttgctgcccataaatggccaatgtctaag
cctagtctaatcgctgagtccaaggatgtgtttgatcagaaagcgagtaacaagtactgg
atagatgtgcaacttcgatggggagattatgactcccatgatattgaacgctatactaag
gccaaattcatggattacacaacggacaacatgtctatctatccatctccaacgggtgta
attattgggcttgatttggcctacaacttgcattccgcctttggtaattggttccctggt
tccaaacctctgcttgctcaagcaatgaacaagatcatgaagtcaaatcccgctctatac
gtgttgagagagaggataaggaaaggtttgcagttgtactcatctgagcctacagagcca
tatctgtcatctcaaaactatggtgaaatattcagcaatcagatcatatggtttgttgat
gataccaatgtataccgtgtcacaatccacaagacatttgaaggaaatctaacaacaaag
ccaatcaatggtgtgatttttattttcaacccaagaacagggcaactattccttaagatc
attcatacaagcgtttgggctgggcagaagcgccttggtcagcttgcaaaatggaaaact
gctgaagaggtcgctgcacttgtgcggtctctccctgttgaagaacagccaaaacaagtt
attgtgactcgtaaaggaatgttggatccccttgaggttcatctgctggatttcccaaac
attgttataaagggaagtgaactccagcttccgttccaggcttgtcttaagatagaaaaa
tttggtgatctgattttgaaggccacagagccgcagatggccctcttcaatatctatgat
gattggttgatgactgtttcttcgtacactgcctttcaaagactcatcctgatccttcgt
gctcttcacgtaaacaatgagaaggcaaagatgttattgaagcctgacatgtctgttgtc
actgagccaaatcacatttggccttctctcactgacgaccaatggatgaaggtggaggtt
gctcttagagatctcatcctttccgactacgcgaagaagaacaaagtaaatacatcagct
ctgacacaatcagagataagagatataatacttggagcggagattactccaccgtctcag
cagaggcaacagatagctgagattgagaaacaggcaaaggaagcgagccagcttactgca
gtcacaacaagaaccacaaatgttcatggtgatgaattgattagcaccaccattagtccg
tacgagcaatctgcattcggatccaaaacagactggcgtgtgcgcgcaatttcagctact
aacctctacctcagggtcaaccacatctacgtgaactcagatgacataaaggaaactgga
tacacctacatcatgccaaagaacatattgaagaagtttatatgcatagcggatcttcga
actcaaattgctggatatttatatgggataagtccgccggataatcctcaagtgaaggaa
atccgttgtgttgtgatggtgccacaatgcggaaatcaccagcaagttcaactgccgtcg
tctcttccggaacatcagttcttggatgatttagagcccctgggatggatacacacacag
cctaacgagcttcctcagttgtcaccacaggatgtgacttttcacactcgtgttctggag
aacaacaagcaatgggacgcagaaaaatgcatcatcctgacatgtagtttcactccgggc
tcatgctctttgacgtcatataagctgacgcaagccggatatgaatggggacggctgaac
aaagacacaggcagcaatccccacggttaccttcccacccactacgagaaggtccaaatg
ctcttgagtgaccgtttcttcgggttctacatggttcctgagaacggaccctggaactac
aacttcatgggagcgaatcacacggtgagcataaactacagcttgacactcggaaccccc
aaggaatactatcaccaagtccatcgacccactcatttcctccagttcagcaaaatggag
gaggatggtgacctcgatcgtgatgactcttttgcttaa
DBGET
integrated database retrieval system
