Arabidopsis thaliana (thale cress): AT4G39420
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Entry
AT4G39420 CDS
T00041
Name
(RefSeq) spatacsin carboxy-terminus protein
KO
K19026
spatacsin
Organism
ath
Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ath03400
]
AT4G39420
DNA repair and recombination proteins [BR:
ath03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
AT4G39420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
830097
NCBI-ProteinID:
NP_001154293
TAIR:
AT4G39420
UniProt:
F4JW20
LinkDB
All DBs
Position
4:18339127..18355149
Genome browser
AA seq
3184 aa
AA seq
DB search
MEKLVKEGPTLLQLHKWEPSQFQLKLSEFREAFISPSRQLLLLLSYHSEALLLPLVAGRS
IGSEVSLSGDNEELNSPSCSGGSDPEKIESPCGSGVGSGEPGFVDNCSSSCNSFPFIFDA
KSVAWGSCGDTYNRHKDPLFRELLFVSGNHGVTVHAFCCTKDLSDKAKGKPNGELRHGEW
VEWGPSRLSQKSEPERVSSSDGSKQWMQSFLIDLETTVIDGTRQSRFPEKSAFPGSAEVV
SFSILNTDLPFSNLLFQDNSILPKDNMPEDGNVNDNNFLVASDPTALDEKSRADMPVNNV
SVNSLYRCIKVFSSDAHSLIGFVMELSDCASTPRRNENERSKGKRNIFVAKLFSWGIEWV
SLVKFGESSIGPTNEWADFRLSDNFVICLSVSGLIFLYDVNSGDFISHGDILQTCGRGLH
SSSDRQEATAEADQLSDFQNRAPSMSKTCIVGSTDRRKFRKLIVASHTPLIAAVDENGLV
YVLCVNDFVSKEYHMAAEPIPDLLHLGLGSLVGWKIGGMDIGQKKVHHPSSSGSRGEDAF
SRRDLSFSASEISMSDPCLERQQNNFDRRAGYSGSWLSGFSAQPKTNGLKLEKFRRDSHV
TRKMFLSAEKLGLDDNICFSPYGFTHFSRKYTNKDDRSCKIFHYSLQTHMTARDDSYLNY
DVNKNSIQGAEENFIGESVGCSFQGFLFLVTCDGLSVFLPSISITSNYPTIEAIEYLQPF
QTTVMGYRGRDDLAAGESRFPWQVEVIDRVILFEGPEVADHLCLENGWDLKIVRLRRLQM
ALDYLKYDDINESLKMLGNVKLAEEGMLRVLFSAVYLLSRKDRNDNEISAVSRLLGLATM
FATEMIRRYGLLEYRKDVYMFDSKPRTQILSLPAVSLNIDVMENSRRLSEMGYLLEITRN
IQSRITRKFKKLGKGNNEKSLNLVDPNSLQDDSQLEIVPDPASAESRQLDTSLFDTNEEL
ALTPMGMMTAGQIIDERSYASGLVPQGIVEEKKVLPLENPKEMMARWKANNLDLKTVVKD
ALLSGRLPLAVLQLHLQHSKDVVEDGEHHDTFTEVRDIGRAIAYDLFLKGEPGVAIATLQ
RLGEDVEACLNQLVFGTVRRSLRYQIAEEMRKLGFLRPYEDNVLERISLIERLYPSSHFW
ETYLARRKELLKAALPFDSSEISLHLGGSSLFQHLKIECGEVDGVVLGSWTKINESASEH
APDETDAVAGYWAAAAVWSNAWDQRTFDHIVLDQPLVMGVHVPWDSQLEYYMCHNDWDEV
LKLLDLIPEDVLYDGSLQIALDGPKQSSGVNYSVSSRSEYICSIEEVDAVLMDVPYIKIF
RLPGDIRCSLWLTTLMEQELARKLIFLKEYWENALDVVYLLARAGVILGNCEVSFKEETC
TPSLDLCLSIKKGGANVDTLNAVHKLFIHYCTQYNLPNLLDLYLDHHELVLDNDSLSSLQ
EAVGDSHWAKWLLLSRIKGREYDASFSNARSIMSRNGAPNSEPSVPEIDEMVCTVDDIAD
GAGEMAALATMMCAPVPIQKSLSTGSVNRHTNSSAQCTLENLRSFLQRFPTLWSKLVSAC
LGEDISGNLLRTKTKNVLSEYLNWRDGVFFSTARDTSLLQMLPCWFPKAVRRLVQLYIQG
PLGWLSFSGYPTGEYLLHRGVEFFINVDDPTEISAISWEAIIQKHIEEELHHTKTEGTEL
GLEHFLHRGRPLAAFNAFLEHRVEKLKLEDQSGSSIHGQRNMQSDVPMLLAPLTQSDESL
LSSVIPLAITHFGDSVLVASCAFLLELCGLSASMLRIDVASLRRISSFYKSNGNADMAHQ
KSLKRSMFHSVSSEDDLMGSLARALANEYAYPDISSVPKQKQNPSISGSQPGLPLMLVLH
HLEQASLPEIGVGRKTSGYWLLTGDGDGSELRSQQTSASLHWSLVTLFCQMHKIPLSTKY
LAMLARDNDWVGFLSEAQLGGYPFDTVLNVASKEFGDQRLKAHILTVLRYANSKKKATTS
FSDDPSRGLSCSPSEGGAYVSAELFRVLAYSEKLKNPGEYLLSKAKEFSWSILALIASCF
PDVSPLSCLTIWLEITAARETSSIKVNDITTKIAENIGAAVVSTNSLPTDARGVQFHYNR
RNPKRRRLTAHTSVDLLASANSLNISAGKTFCSHRTEAAEDEKAEDSSVIDDSSDEHASL
SKMVAVLCEQRLFLPLLKAFDLFLPSCSLLPFFRALQAFSQMRLSEASAHLGSFWGRVKE
ESMHFQSNTAKDVNFGASWISRTAVKAADAVLSACPSPYEKRCLLQLLAATDFGDGGSAA
TYYRRLYWKVNLAEPSLRENDLDLGNESLDDGSLLTALEKNRQWEQARNWAKQLETIGAT
WTSSVHHVTETQAESMVAEWKEFLWDVPEERIALWGHCQTLFIRYSFPALQAGLFFLRHA
EVVEKDLPAREIYELLLLSLQWLSGLTTLSHPVYPLHLLREIETRVWLLAVEAESHVKNV
GAFSPSSIGKDMVNGYSSNLIDRTASIITKMDSHISSATKNRIGEKHDARAAGQGNQRNQ
DTSTSIFGASTKPKRRAKGNVPQIRHFVDSSDRNTDFEDSSSLINIKSEFQLQEESTGLE
ISLSKWEESIEPAELERAVLSLLEFGQVTAAKQLQLKLAPGNLPSELIILDAVMKLAMLS
TPCRQVLLSMLDDEVRSVIQSHSLKIDQPMIEPLQILENLSTILNEGSGRGLARKIIAVI
KAANILGLTFTEAYQKQPIELLRLLSLKAQDSFEEACLLVQTHSMPAASIAQILAESFLK
GLLAAHRGGYIDSQKEEGPAPLLWRFSDFLKWAELCPSEQEIGHALMRLVITGQEIPHAC
EVELLILSHHFYKSSTCLDGVDVLVALAATRVEAYVAEGDFSCLARLITGVGNFHALNFI
LNILIENGQLDLLLQKFSAAADANTGTAQAVRSFRMAVLTSLNLYNPNDHDAFAMVYKHF
DMKHETATLLEARADQAAQQWFLRYDKDQNEDLLDSMRYYIEAAEVHTSIDAGNKARKAC
GQASLVSLQIRMPDSKWLCLSETNARRALVDQSRFQEALIVAEAYGLNQPSEWALVLWNL
MLKPELAEDFVAEFVAVLPLQASMLLELARFYRAEMAARGDQSQFSVWLTGGGLPAEWAK
YMWRSFRCLLKRTRDLRLRLQLATTATGFADMVDVCMNALDKVPENAGPLVLKKGHGGGY
LPLM
NT seq
9555 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagttggtgaaggaaggcccaactctgctgcaactgcacaagtgggaaccttct
caatttcaactcaagctatcagaatttcgcgaggcgtttatttctccgtcgaggcagttg
ttattactactctcttaccactccgaagctttactgcttcctttggttgcagggaggtcc
attggcagtgaggtttcgttaagtggtgataatgaagagttgaatagtccttcatgctct
ggtgggtcagatccagagaaaattgaatctccttgtggatcaggagttggttctggtgag
cctggttttgtagataattgcagttctagttgcaatagtttcccttttatctttgatgca
aagtctgttgcttggggtagttgtggggatacttacaatcggcacaaagatcctttgttt
agggaattgttgtttgtatctggaaatcatggtgttacggtccacgctttttgctgtaca
aaagatttaagtgacaaagccaaaggcaaaccaaatggtgagctgaggcatggggagtgg
gttgagtggggaccttctaggcttagtcagaaatcagaaccggaaagagtctcttcttct
gatggctcaaagcagtggatgcaatcttttttgattgatttggaaactactgtaattgat
ggtacaagacagtcgaggttccctgagaagtcagcgtttccgggttctgcagaggttgtt
tcattcagcatattaaatactgatttacctttctcgaatcttcttttccaagacaactcc
atacttccgaaggataatatgcctgaggatggtaatgtaaatgacaataattttctcgta
gcatctgatccaactgctttggatgaaaaatctcgagctgatatgcccgtaaacaatgtc
agtgtaaacagtttgtacaggtgcatcaaagttttctccagcgatgctcattctctgatt
ggatttgttatggagttatcggattgtgcatctacgcctagaaggaatgaaaacgaaaga
agcaagggtaagagaaatatctttgttgccaagctgtttagctgggggatagaatgggtc
tcccttgtgaagtttggtgagtcaagtattggacctacaaatgagtgggcagatttccgg
ctatccgataactttgttatctgcctcagtgtttctggtttgatctttctatatgatgtg
aattctggggattttatttctcatggggatatcttacagacatgcggtcgtggattgcat
tcttcatcagataggcaagaagcaactgcagaagcagatcagctaagtgactttcaaaat
cgtgctccatccatgtctaagacttgtattgttggttccacggacagaagaaagtttaga
aagcttattgtagcttctcatacaccactcatagctgcagttgacgaaaatggtttggta
tatgtattatgtgtcaatgactttgtttccaaggaataccacatggccgcggaacctatt
cctgatttacttcatcttgggcttggaagtctggttgggtggaaaatcggcggcatggac
attggccagaaaaaagtgcaccaccctagttcctctgggtctcgaggtgaagatgctttt
tccaggcgtgatcttagcttttctgcttcggaaatctcgatgtctgacccatgtttggaa
agacaacagaacaattttgatcgaagagctggttactctggttcatggttgagtggtttt
tctgcacagcctaaaacaaatgggctgaaacttgaaaaatttcgaagagactcgcatgtc
acgcggaagatgtttctatccgccgaaaaattaggattggatgataacatatgtttttct
ccatatggattcactcatttctctagaaagtatacaaataaggatgatcgaagctgtaag
atttttcattatagtctgcagacgcatatgactgcgagagatgatagttatttgaattac
gatgtcaacaagaattctattcaaggtgcagaggagaatttcataggagaatcagttggt
tgctctttccaaggatttctttttttggtgacttgtgatggtctttcggtttttctccct
tctatctcaataacctcaaattacccaactattgaggccattgaatatctgcagccattc
cagaccactgtcatgggataccggggaagagacgatttggcagcaggggaatcacgtttt
ccttggcaagttgaggtcatagatagagttatcttgtttgaaggccctgaagttgcagat
catttatgcttggaaaatggttgggacctcaaaattgttcgtttgcgtcgactgcaaatg
gcgttggactacttaaaatatgatgacatcaacgagtctttgaagatgcttggtaatgtg
aagctggcagaggaaggcatgctgagggtgctcttttctgctgtgtatctattgtcgcgc
aaggatagaaacgataatgagatttctgctgtatctaggctccttggattggctacaatg
tttgcgactgagatgattcgcagatatgggttacttgaatatcggaaagatgtttacatg
tttgacagcaaacctaggacacagatactttcacttccagcagtttcacttaatatcgat
gtaatggaaaattcaaggaggctgtcagagatgggttatctattggaaatcaccaggaat
attcaatcccgtattaccagaaagtttaagaagctaggaaagggaaataatgagaagtca
ctgaacctggtagacccaaattctttgcaggatgattctcagcttgaaattgttccagat
ccagcatctgcagagtcaagacaacttgacacttctttatttgataccaatgaggagctt
gctttgacgcctatgggtatgatgacagctggtcaaatcattgacgaaagaagttatgca
tctggccttgtaccccaagggatagttgaagaaaagaaagttcttcctctggaaaatccc
aaggagatgatggctcgttggaaggctaacaatttggatttaaaaactgtggttaaggat
gccttgctctctggtcgactccctttagctgttcttcaattgcatcttcaacattctaaa
gacgtggttgaagatggagagcatcatgatacatttactgaagttcgtgatatcggaaga
gctattgcttatgacctatttttgaagggtgaacctggggttgccattgccactctgcaa
aggctcggagaggatgtagaagcatgtctcaatcagttggtatttggcacagtgagaaga
tctcttcgatatcaaattgctgaagaaatgagaaaacttggtttcttaagaccatatgaa
gacaatgtactggagaggatatctcttatcgagaggctttatcctagcagccacttttgg
gaaacatatcttgctcgtcgaaaggaactccttaaagctgcactaccttttgactccagt
gaaattagcttgcaccttggggggtcgtctttgtttcagcatctcaagattgagtgtggt
gaggttgatggtgttgttctaggttcttggactaaaatcaatgagagtgcatctgagcat
gcacctgatgaaaccgatgcagttgctggctactgggctgcagcagctgtgtggtcaaat
gcttgggatcagagaacatttgatcatatagtcttggatcagcccttagtcatgggtgtt
catgttccatgggattctcagctggagtattatatgtgtcacaatgactgggatgaagtt
cttaagctgttggatctcattcctgaggatgttttatatgatggaagtttgcaaattgct
ttggatggtccgaaacagtcttctggcgtaaattattcagtttcttcccgtagcgagtat
atatgctccatcgaagaagtggatgctgtacttatggatgttccttatatcaagatattt
agattgcctggagatatccggtgctccttgtggctaacaacactcatggagcaggaacta
gcaagaaaacttatatttttaaaagaatattgggaaaacgctctagatgtagtatatctt
ctggcccgggcaggtgtcatccttggtaattgtgaagtttcatttaaggaggaaacttgt
acgccatcgttagatctttgtttgtccataaagaagggaggagcaaatgttgataccctg
aatgctgtacacaagctattcatacattactgcacacagtataatctgccaaaccttctg
gatctgtaccttgatcatcacgaattggtcctagataatgattcactcagttcattgcag
gaagctgtgggtgattctcactgggcaaaatggttgctactctccaggatcaagggccgg
gagtatgatgcttcattttcaaacgcacgctcaattatgtcacgtaacggggcaccaaat
agtgaacccagtgttccagagattgatgaaatggtttgtactgttgatgacattgccgat
ggggcaggagaaatggcagctttagcaactatgatgtgtgctccagtgccaattcaaaaa
tccttgagtactggcagtgtgaacaggcacactaactcttctgcgcagtgcactttggag
aatttgagatcatttcttcagagattccctaccttatggagtaagcttgttagtgcttgt
cttggggaagatatatccgggaaccttttgcggaccaagactaagaatgtcttgtcagag
tatttgaattggcgtgacggtgtattcttctcaacggcacgtgatacctcactcctccag
atgttgccttgttggtttcctaaggcggttcgtagattagttcagctttatattcaggga
cctcttggatggctgtctttctcaggatatcctacaggggaatatctactgcatagaggt
gttgagttctttataaatgtcgacgatccgacagagataagtgccatatcttgggaagca
atcatccagaagcacatcgaagaggaacttcatcacacaaaaactgagggaaccgagctt
ggacttgagcacttcctgcatcgtggacggccactcgcagcttttaatgcttttctggaa
catagagttgaaaagttaaaactggaagatcaatctggctcttcgatacatggacaaaga
aatatgcagtcagatgttccgatgctacttgcacctctgacgcagagtgatgagtcactt
ctttcatctgtcataccacttgctatcacacactttggggattctgtgttggtggcttcg
tgtgccttccttcttgagctttgtggtttatctgctagcatgcttcggatagacgttgca
tccttgagaagaatatcatccttctataaatcaaatggtaatgcggatatggcacatcag
aaatcgctgaagcgctcaatgtttcatagtgtatctagtgaagatgatctaatggggtca
ctagctagggcccttgctaacgaatacgcttatcctgatatttcaagtgtccctaagcaa
aaacagaatccaagtatttctggtagtcaacccggtcttccgctaatgcttgttcttcat
catttggaacaagctagtcttccagagattggagtaggtagaaaaacaagtggatactgg
ctgttaacaggtgatggtgatgggtctgaactgcggtctcaacagacatctgctagcttg
cattggagtttagttactcttttttgtcagatgcataagattcctctgagcaccaaatat
cttgccatgctagcaagagacaatgattgggttggatttttatctgaggcgcagcttgga
ggatacccatttgatacagtgctcaatgtggcatcgaaggagtttggtgatcaacgttta
aaagctcacatactgactgttttgagatatgccaactcaaaaaagaaagccaccacatcg
ttctcagatgacccaagcagaggactttcatgttccccctcagagggtggagcttatgtc
tctgctgaactctttcgtgttttggcatactctgagaagctaaagaatcctggggaatac
cttttgtcaaaagctaaggaattctcgtggtctattttggctctcatagcatcatgcttt
ccggatgtttctcctttatcatgcctaacaatttggttggaaattaccgcagccagggaa
acgtcgtctatcaaggtgaacgatataacgactaaaatagctgaaaatataggagcagct
gttgtatctacaaattccttgccgacggatgctagaggtgtccagtttcattacaatagg
aggaatcccaaacggagacgacttactgcacatacatctgtggatttattggcttcagcc
aatagtttaaacatctctgctggtaaaacattttgttctcatagaacagaagctgcagaa
gatgaaaaagcggaagatagcagtgttattgatgattcgtctgatgagcatgcgtctcta
tcaaaaatggtcgcagtgctttgtgaacaacgcttgtttcttcctctgctaaaagctttt
gacttgttcctcccgtcctgctctctactgccatttttccgtgctcttcaggcattttct
caaatgcgcctgtctgaagcttcagcacatctgggttctttttggggtagagttaaagag
gaatcaatgcattttcagtcaaatacagccaaagatgtcaattttggggcatcttggatc
agcagaacagctgttaaggctgctgatgctgttttgtcagcttgtccatctccatatgag
aaaagatgcttactacaacttcttgctgcaactgattttggtgatgggggatctgcggca
acatattatcggcgtctttattggaaagttaacttggctgagccatcactccgggagaat
gatcttgacttaggaaatgagtcccttgatgatggctctcttctgacagctttagaaaag
aacaggcaatgggagcaagcaagaaactgggccaagcaacttgaaaccattggtgccact
tggacatcctctgtacatcatgttactgaaacacaggcagaatccatggttgcagaatgg
aaagaattcctttgggatgttccagaagagagaatcgcattgtggggtcactgccaaact
ctgttcatcagatactctttccctgctttacaggcaggtttatttttccttaggcatgca
gaagtggtggagaaagatcttcctgcaagagagatctatgagctgttactgctatccctt
cagtggctaagtgggctaacaactctgtcgcacccggtttatcctttgcatcttctccga
gaaatcgagactagggtatggttactggctgtagaagcagaatcacatgtgaaaaatgtc
ggagcatttagtccgagtagtatcggaaaagacatggtgaatggatatagttcaaatctt
atagatcgaactgcaagtatcataacaaaaatggacagccatatttcttcagcaacgaaa
aatagaattggagaaaaacatgacgccagggccgctggccaaggaaatcaaaggaaccaa
gacacgagcacttcaatatttggtgctagcactaagcccaagaggagagcaaaaggaaat
gtcccacaaataagacattttgtggattcttcagataggaatactgactttgaagattct
tcatctcttataaacatcaaaagcgagttccagcttcaagaggagagcacgggtttggaa
atatccttatcgaagtgggaagaaagtatagaacctgcagagttggaaagagctgttctg
tccttactggagttcggacaagtaacagctgctaagcagctccaacttaagcttgctcca
gggaatctaccttctgagctgataattttggatgctgttatgaagctagcaatgctttct
acgccttgcagacaagtactattgtcaatgttagatgatgaagttcgctctgtcattcaa
tcacacagtctaaaaatagaccaacctatgattgaaccgctgcagattttggagaatcta
tcaaccattttaaatgaaggcagtggacgagggctggcaagaaaaatcatcgcagttata
aaagctgctaacatactgggccttacattcactgaggcatatcaaaagcagccgatagag
ttgttacgattactttctcttaaagcacaagattcttttgaggaagcatgtctccttgtc
caaacgcattcaatgcccgctgctagtatcgctcaaatacttgcagaatcctttctaaag
ggtttattggctgctcatcgtggaggatatatagattctcaaaaggaggaagggcctgct
ccacttttgtggagattttcagactttttgaagtgggcggagctttgtccatctgaacaa
gaaattggtcatgcattaatgcgtcttgtaataaccgggcaggaaataccacacgcgtgt
gaggttgagcttcttattctgtctcatcacttctacaagtcatccacgtgccttgatgga
gtagatgttcttgtggcacttgctgccacaagggttgaggcttatgttgctgagggagat
ttctcatgcctggctcgtctaataactggagttggaaactttcatgctcttaatttcatt
ctcaatattctaatcgaaaacgggcagcttgatcttttactacaaaaattttctgctgct
gctgatgcaaacactggcaccgctcaggctgtcagaagtttccggatggctgttctgacc
tcgttgaatctgtataacccaaatgaccatgatgcattcgcaatggtatataaacacttt
gacatgaagcatgaaacggctactttgctagaggcacgtgcagatcaggctgcacagcag
tggtttctacggtatgacaaggatcaaaatgaagatctccttgattctatgcgctattac
attgaagctgccgaagttcacacttctattgatgctggaaacaaagcgcgaaaggcttgt
ggtcaggcttcccttgtctcccttcagataaggatgccagattccaagtggctctgttta
tctgaaacaaacgcaagaagagcacttgtagatcaatcccgtttccaggaggctctgatt
gtagcagaagcttatggtcttaaccagccaagcgaatgggcgctggtgctttggaatctg
atgctcaaacctgaactagcggaagattttgtggctgaatttgtagcggtgcttccccta
caggcttcaatgcttctggaactggctagattctacagagcggaaatggcagctagggga
gaccagtctcagttctcagtctggctcacaggaggaggcttaccagctgagtgggccaaa
tatatgtggaggtcattcaggtgtttgttgaaaagaacacgggatttgaggttgcggtta
cagcttgctacaacagcaacgggatttgctgacatggtagatgtgtgtatgaatgcgttg
gataaggtcccggaaaatgctggaccacttgtactaaagaaaggacatggaggaggatac
ttaccactcatgtga
DBGET
integrated database retrieval system
