Arabidopsis thaliana (thale cress): AT4G39680
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Entry
AT4G39680 CDS
T00041
Name
(RefSeq) SAP domain-containing protein
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03013
Nucleocytoplasmic transport
ath03015
mRNA surveillance pathway
ath03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
AT4G39680
09122 Translation
03013 Nucleocytoplasmic transport
AT4G39680
03015 mRNA surveillance pathway
AT4G39680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT4G39680
03041 Spliceosome [BR:
ath03041
]
AT4G39680
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
AT4G39680
Spliceosome [BR:
ath03041
]
Complex C
Other components
EJC/TREX
AT4G39680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
SAP_new25
Motif
Other DBs
NCBI-GeneID:
830123
NCBI-ProteinID:
NP_001078515
TAIR:
AT4G39680
UniProt:
O65655
A0A654FXJ3
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Position
4:complement(18414306..18417608)
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AA seq
633 aa
AA seq
DB search
MSSSPFPVLDNRPIDKWKVTELKEELKRRRLTTRGLKEELVRRLDEALRAEQEESERINS
ATVAAAEKANQEPQMFPVTVGDRNQTTPVTPVEAAFSTETTPVTAEKTPEPTQTKITTEA
SAGVETTPAPVFSEPEVNAVPFASDEDEKEKVDDVRDIAGLDSSVVARDAAVVQVASSEH
KSENNEPFSGLDGGDSKAQPSEAVLEKSAMYNQVSEVIPVTGFEVKSDCISTDSVSNNEK
IELKDNKIADNVKLEQNVNKFQEPSTVVGESHPMDVEEPLEQKTSVGGGDDSNAANADMI
KENNIIDAGDSEKLNLDRSSGDESMEDEPETKQSESITSDDKSAKIEMLSKEESRADMDA
GKGKSPENKSHPLVASDKRKLPANDQEAVGNNEPAKRRRWNSNSIKVPEAQITNSATPTT
TPRSTGLKRDFSRSDSSVSEDGPKERVVPPSPKEPTNSLRIDRFLRPFTLKAVQELLGKT
GNVTSFWMDHIKTHCYVSYPSVEEAAATREAVYNLQWPPNGGRHLIAEFVRAEEVKEKLE
APLPPQPQHQPQAQTLSRPPPTALPPPPPLAKPPHVVERLPLPPPPPIAPEEQEPPIVTL
DDLFKKTKAIPRIYYLPLSEEQVAAKLAANNNK
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcatcgccttttccagtcttggacaaccgaccaattgataagtggaaggttacg
gaattgaaagaagagcttaaaagacggagactaacaacaagaggcttgaaggaggaattg
gttaggcgtcttgatgaagcacttcgtgctgagcaagaagagtctgaaaggatcaatagt
gctactgttgctgctgctgaaaaagccaatcaagagcctcagatgtttcctgttactgta
ggtgatcgtaatcaaaccactcctgttactcctgttgaagcggcatttagcactgagaca
actcctgttacagctgagaaaaccccagaaccaactcagaccaagataacaactgaagct
tcagctggtgttgagactacaccagccccggtgttttcagaaccagaggttaacgctgtg
ccattcgctagtgatgaagatgagaaagagaaagttgatgatgttagagacatagctggt
cttgatagttcagtggttgcacgtgatgcagcagttgtgcaagtggcgtctagtgagcac
aaatctgagaataatgaaccatttagtgggttggatggtggggattctaaggctcaacca
tcagaggcagtgcttgaaaaatctgctatgtacaaccaggtatctgaggtcatccccgtt
acagggtttgaggtaaaatctgattgtatttctactgattctgtgtcaaataatgaaaaa
atagaactaaaggataacaaaattgctgataatgtcaaattagaacaaaatgttaataag
ttccaagagccatcaacagtcgttggcgaatcgcatccaatggatgtcgaggagccactt
gagcagaagacatctgttggaggtggggatgacagcaatgctgcaaacgcagatatgatc
aaagaaaataatattatcgatgcaggcgactcagaaaagttgaatttagatagaagttct
ggtgatgagtctatggaggatgagccggagacaaagcaatccgagtcaattacatctgat
gataagagtgcaaaaattgaaatgctttctaaggaggaaagccgtgctgatatggatgcg
gggaaagggaaatcccctgaaaataaaagtcacccactggtggcttctgacaaaagaaag
cttcctgctaatgatcaagaagctgttggaaacaatgaacctgcaaagaggcgccgatgg
aactctaatagtattaaagttcctgaagcacagatcactaatagtgctacacccactaca
acaccaaggtcgactggtctgaagcgcgacttctcaaggtctgactcttcggttagtgaa
gatggacccaaggaacgtgtggttcctccatctccaaaggagcctacaaattccctcagg
attgaccgtttccttaggccgttcacactgaaagctgttcaggagctcctgggtaaaacc
ggaaatgtcactagtttctggatggaccacattaagacccactgctatgtatcgtatccc
tcggttgaagaagcagcagcaacaagagaagcagtgtataacctccagtggccacctaat
ggaggccgccatctgatagctgaatttgttagagcagaagaagtaaaagaaaaactggaa
gctcctctgcctcctcagcctcagcatcagccacaagctcagactctttcgcggccacct
ccaactgctcttccaccaccaccacctctggccaaaccacctcacgttgtagaacgtctt
cctctgcctccccctcctcctatagcccctgaggaacaagaacctcccattgtcactctt
gatgatctattcaagaagacaaaagcgatccccaggatatattacttacccttgtcagag
gagcaagttgcagctaaacttgcagcgaataataacaagtga
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