Arabidopsis thaliana (thale cress): AT5G02530
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Entry
AT5G02530 CDS
T00041
Name
(RefSeq) RNA-binding (RRM/RBD/RNP motifs) family protein
KO
K12881
THO complex subunit 4
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03013
Nucleocytoplasmic transport
ath03015
mRNA surveillance pathway
ath03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
AT5G02530
09122 Translation
03013 Nucleocytoplasmic transport
AT5G02530
03015 mRNA surveillance pathway
AT5G02530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT5G02530
03041 Spliceosome [BR:
ath03041
]
AT5G02530
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
AT5G02530
TREX complex
AT5G02530
Spliceosome [BR:
ath03041
]
Complex C
Other components
EJC/TREX
AT5G02530
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
AT5G02530
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
Motif
Other DBs
NCBI-GeneID:
831923
NCBI-ProteinID:
NP_195873
TAIR:
AT5G02530
UniProt:
Q8L719
LinkDB
All DBs
Position
5:complement(564085..565925)
Genome browser
AA seq
292 aa
AA seq
DB search
MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP
YSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGVS
NEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKI
EIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGRGGFMGRPR
GGGFGGGNFRGGRGARGRGGRGSGGRGRDENVSAEDLDAELDKYHKEAMETS
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggtggcttagatatgtcacttgatgatatcatcaaatctaatcgaaaacctact
ggatctcgcggccgaggaggcattggaggtggcaataacaccggtggtcgcggtggttcc
ggttctaattccggtccgtctcgtcggtttgctaaccgcgtaggagccagaacggcgccg
tattcaaggccgattcaacaacaacaagctcatgatgcgatgtggcaaaacgacgtcttc
gcgactgatgcgtctgtggcggcggcttttgggcatcatcagactgctgttgttggtggt
ggctcgtctatcgagactggaactaagctttacatttcaaacttagactatggtgtctcc
aacgaagatatcaaggagcttttctctgaggttggtgatcttaagcgatatgggattcac
tatgataggagtggaagatcaaaggggactgctgaagttgttttctcgaggcgtggggat
gcattggcagctgtcaagcgttacaacaatgttcagttggatggaaaactgatgaagata
gagattgttgggactaatctttctgctccagctcttcccattcttgctacagctcagatt
ccttttcctactaatgggatacttggcaactttaatgagaactttaatggcaatttcaat
ggcaacttcaatggaaacttcagaggcagaggaagaggcggttttatggggcgtcctcgt
ggtggtggttttggcggtggtaatttcagaggtggcaggggagctagaggacgtggtggt
cgtggcagtggtggaagaggacgtgatgaaaacgtatctgcagaggatcttgatgctgaa
ttggacaagtaccacaaagaggcaatggaaacaagttag
DBGET
integrated database retrieval system
