Arabidopsis thaliana (thale cress): AT5G04895
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Entry
AT5G04895 CDS
T00041
Symbol
ABO6
Name
(RefSeq) DEA(D/H)-box RNA helicase family protein
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AT5G04895 (ABO6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT5G04895 (ABO6)
03012 Translation factors [BR:
ath03012
]
AT5G04895 (ABO6)
Enzymes [BR:
ath01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AT5G04895 (ABO6)
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
AT5G04895 (ABO6)
Translation factors [BR:
ath03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
AT5G04895 (ABO6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
T2SSE
ATPase
nSTAND3
AAA_19
AAA_16
PhoH
Myosin_head
Motif
Other DBs
NCBI-GeneID:
830371
NCBI-ProteinID:
NP_680142
TAIR:
AT5G04895
UniProt:
Q9FF84
LinkDB
All DBs
Position
5:1428597..1434769
Genome browser
AA seq
1161 aa
AA seq
DB search
MRFTKRISLFLGQTTRIHSRSLLGNPTLCRSYIVGPVSTSSPAFLISSRNGDGVTGLYYP
IRRRFIGHTAEQFSDDEYECEFEEHKASSSVANVDEWKWKLGILLANDSEQEIVSRDKRD
RRDYEQISNLAKRMGLYSEIYGKVVVASKVPLPNYRPDLDDKRPQREVVLPLSLQRRVEG
LLQEHLDSQQLSSGKANECVADSQPPKQTEELPDENSDSFLDGSVMEKVLQRRSMRMRNM
QRTWQESPEGRTMLEFRKTLPSFKDKERLLQAIARNQVIVVSGETGCGKTTQLPQYILES
EIESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGFKVRLEGMRGKNTHLLFC
TSGILLRRLLSDRNLNGVTHVFVDEIHERGMNEDFLIIVLKELLPRRPDLRLVLMSATLN
AELFSNYYGGAPTIHIPGFTHPVKAHFLEDVLEITGYKLTSFNQVDDYGQEKTWKTQKQL
MPRKRKNQITTLVEEALSKSNFESYNSRTRDSLSSWMPDCIGFNLIEAVLCHICRKERPG
AVLVFLTGWDDIRSLSDQIKAHPLLGDPNRVLLLMCHGSMATAEQRLIFERAPPNIRKIV
LATNMAEASITINDVVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRLFP
GECYHLYPKCVYDAFAEYQLPELLRTPLNSLCLQIKSLQVESIAEFLSAALQAPESLAVQ
NAIGFLKMIGALDEKENLTDLGKLLSILPVDPKLGKMLIMGAIFRCFDPILTIVSGLSVR
DPFLLPQDKKDLALSAKLRFSAKDYSDHMALVRAFEGWKDAEREGSAYEFCWRNFLSAQT
LQAIHSLRKQFNYILKEAGLVHDDLALNNKLSHNQSLVRAVICSGLFPGIASVVHRETSM
SFKTMDDGQVSLYANSVNSRFPTIPYPWLVFGEKVKVNAVLIRDSTGVPDSSLILFGGSL
STGVQVGHLKMLDGYIDFFMDPNLAESYVKLKEELDKLLQKKLEDPSMDIHKEGKYLMLA
VQELVAGDQCEGRFVFGRDTKRPSQPQIGENKHSKDGTNPKSLLQTLLMRAGHSPPKYKT
KHLKTNEFRALVEFKGMQFVGKPQRNKTLAEKDAAVEALAWLTHTSDNSTGQHNEDADSP
PDVTDNMLKLLGGRRRRSKGK
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgcgtttcacaaaaagaataagcctcttcttggggcagacgaccaggattcatagtcgc
tctctattgggaaatccgactttatgcaggtcttatatcgttggtccggtctctactagt
tctccggcgtttctgatttcgagtcgtaatggtgatggtgttacgggattgtactacccg
atacgtcgtcgtttcatcgggcacactgcggaacagttctcggatgatgagtacgagtgt
gaattcgaggaacataaggcttcatcttctgtggccaatgttgatgagtggaagtggaag
ttaggaattttgttggccaatgatagtgaacaagaaattgtttccagagacaaaagggat
cgaagagattatgagcagatctcaaatcttgctaagagaatgggactttacagtgaaatt
tatggaaaagtggttgttgcaagcaaggttcctcttcctaactaccgaccagatttggat
gataagcgaccacaacgggaggtggtgcttccgttgagtttgcaaagaagggtagaggga
ctcctccaggaacatcttgatagtcagcagctaagctcaggaaaggctaatgaatgcgta
gctgattctcaacctcctaaacagactgaagaacttcccgatgaaaattctgattcgttt
ctcgatggttctgttatggagaaggtacttcagaggaggagtatgcggatgcgcaatatg
cagagaacctggcaggaatcccctgagggacggacgatgctggaattcaggaaaactttg
ccttcattcaaggacaaagaaagacttcttcaagctattgctcggaaccaggtgatagtt
gtatctggggagactggatgtggtaagacaactcagcttccacaatacattttggaatca
gagatagagtctggtcggggagcattctgcaacatcatttgtactcaacctaggagaata
tctgccatggcagtttcagaaagagtgtcagctgaaagaggagaacctcttggtgaaacg
gttgggtttaaagttcgtctagaaggaatgagaggaaagaatacccaccttctattttgt
acaagtggtatccttctcagacggctgcttagtgatcgcaatttgaatggagttacacat
gtttttgttgatgagattcatgaaaggggcatgaatgaagatttcttaattatagtgtta
aaggagcttcttccacggcgtccagatctgagattggttctcatgagtgccactttgaat
gctgaactcttttctaattactatggaggggcacctaccattcacattcctggcttcaca
catccagtgaaagcacattttttggaggatgtactggaaataacgggatataagctgacc
tcttttaatcaagttgatgattatggccaagaaaagacgtggaaaacgcaaaaacagtta
atgcctcgcaaaagaaaaaaccagatcactactcttgttgaggaagctctcagcaagtca
aattttgaaagctataactctaggacacgtgattctctttcgtcttggatgcctgactgc
ataggatttaatctcattgaggctgttctctgtcacatatgccgaaaagaacgtccaggt
gctgtattagtatttttgacaggatgggatgatatcagatccctgagcgaccaaattaaa
gcccatcctctcttgggagatccgaacagggttttgctattaatgtgccacggttcaatg
gcaactgctgagcagagactcatttttgagagagcacctcctaatattcgcaaaattgtt
cttgctacaaacatggcagaagctagtattacaataaacgatgtagtgtttgtggttgac
tgtggaaaagcaaaagagaccacctatgatgctttgaacaatacaccttgtctgctacct
tcttggatatctcaagcttctgcgagacagagaaggggaagagctgggcgtctgtttccg
ggagaatgctatcacctgtaccccaaatgcgtctatgatgcttttgcagagtatcaactt
cctgaacttctgagaactcctttaaactctctctgcctgcaaattaaaagtcttcaggtt
gaaagcattgcagaattcttgtcagctgcacttcaggctccagagtctttggctgttcaa
aatgctattggattcctgaaaatgatcggagcactggatgagaaggaaaatctaacggat
cttggaaaactcttatcgattcttcctgttgatcccaagttggggaaaatgctgataatg
ggtgccatcttccgctgctttgatccgatcctgacaattgtatcagggctaagtgtcaga
gatcctttccttctacctcaagacaaaaaagacttagctttatcagccaagttgagattc
tcagccaaagactacagtgaccatatggcactcgttcgtgcctttgaagggtggaaagat
gctgaaagagaaggatcggcttatgagttttgttggaggaatttcctgtcagctcagacg
cttcaggcgatacattctctgaggaagcagttcaactatattttgaaagaagctggctta
gttcatgatgatttagctctcaacaacaagctaagtcacaaccagtctctggttcgtgct
gtcatttgctctggcctattccctggaatagcatctgttgtgcacagagagacttccatg
tcattcaagacaatggatgatggccaagtatcactatacgcgaattctgttaattcgcgg
ttcccaacaattccatacccttggctagtctttggagagaaagtaaaggtcaatgcggta
ctcatacgggactccactggtgtccctgattccagtttgatcctttttggtggttcattg
agcacgggagtacaggtgggacatctaaaaatgcttgacgggtacattgatttcttcatg
gatccaaatttggctgagtcctatgtaaagctgaaggaagaactcgataagcttcttcaa
aaaaagcttgaagatccaagcatggacatccacaaagaaggcaagtacctcatgcttgca
gttcaagaacttgtggctggagaccaatgcgaaggcagatttgtctttggccgtgacaca
aagaggccaagccaaccgcaaataggagagaacaaacactccaaagacgggacaaacccg
aagagtctccttcagacacttttgatgagagctggacactcacctccaaagtacaagaca
aaacatctcaagacaaacgaattcagagcacttgtggagtttaaaggaatgcagttcgtt
gggaagcctcagaggaataaaacgctcgctgagaaagatgctgctgttgaggccttagct
tggttgactcatacctctgataatagtactggccaacacaatgaggatgcagattctcca
cctgatgttactgataacatgcttaaactccttggaggacggcgcaggcgatccaagggc
aagtaa
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integrated database retrieval system
