Arabidopsis thaliana (thale cress): AT5G05490
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Entry
AT5G05490 CDS
T00041
Symbol
SYN1
Name
(RefSeq) Rad21/Rec8-like family protein
KO
K06670
cohesin complex subunit SCC1
Organism
ath
Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ath03036
]
AT5G05490 (SYN1)
Chromosome and associated proteins [BR:
ath03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
AT5G05490 (SYN1)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Rad21_Rec8_N
Rad21_Rec8
Motif
Other DBs
NCBI-GeneID:
830432
NCBI-ProteinID:
NP_850773
TAIR:
AT5G05490
UniProt:
Q9S7T7
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Position
5:1624206..1629269
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AA seq
627 aa
AA seq
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MLRLESLIVTVWGPATLLARKAPLGQIWMAATLHAKINRKKLDKLDIIQICEEILNPSVP
MALRLSGILMGGVVIVYERKVKLLFDDVNRFLVEINGAWRTKSVPDPTLLPKGKTHARKE
AVTLPENEEADFGDFEQTRNVPKFGNYMDFQQTFISMRLDESHVNNNPEPEDLGQQFHQA
DAENITLFEYHGSFQTNNETYDRFERFDIEGDDETQMNSNPREGAEIPTTLIPSPPRHHD
IPEGVNPTSPQRQEQQENRRDGFAEQMEEQNIPDKEEHDRPQPAKKRARKTATSAMDYEQ
TIIAGHVYQSWLQDTSDILCRGEKRKVRGTIRPDMESFKRANMPPTQLFEKDSSYPPQLY
QLWSKNTQVLQTSSSESRHPDLRAEQSPGFVQERMHNHHQTDHHERSDTSSQNLDSPAEI
LRTVRTGKGASVESMMAGSRASPETINRQAADINVTPFYSGDDVRSMPSTPSARGAASIN
NIEISSKSRMPNRKRPNSSPRRGLEPVAEERPWEHREYEFEFSMLPEKRFTADKEILFET
ASTQTQKPVCNQSDEMITDSIKSHLKTHFETPGAPQVESLNKLAVGMDRNAAAKLFFQSC
VLATRGVIKVNQAEPYGDILIARGPNM
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgttgagactggagagtttgatagtaacagtgtggggaccagcgacgcttctagctcga
aaagctccgttgggtcagatatggatggccgctacattgcacgcgaagatcaaccggaag
aaactagataagctcgatatcattcaaatctgcgaagagattttgaatccgtcggttccg
atggctcttagactctccgggattcttatgggtggtgttgtgattgtttatgagaggaaa
gtgaagctcctattcgatgatgttaatcgctttctggttgaaattaatggagcttggcgc
acaaaatctgttccggatcccactttactacctaaaggaaaaacccatgccaggaaagag
gctgttacattgcctgagaacgaagaagctgattttggagattttgaacagactcgtaat
gttcctaaatttggcaattacatggattttcagcagacttttatttccatgcggttagat
gaatcccatgttaacaataaccccgagccagaagatcttggacagcagttccatcaagct
gatgccgagaatatcacactctttgagtatcatggttcattccagaccaacaatgaaaca
tatgatcgttttgaaagatttgacatcgaaggagatgatgaaacacagatgaactccaat
ccaagagaaggcgctgaaatacctacaactctcatcccatcaccacctcgtcatcatgac
attcccgaaggagtcaaccccacaagccctcagcgccaggagcaacaggagaatcgtagg
gacggatttgctgagcagatggaggaacaaaacataccggacaaagaggaacacgataga
ccacaaccagcgaaaaagagagcaagaaagacagctacttcagcgatggattatgagcaa
actattatcgctggtcatgtttaccagtcatggctccaggatacttctgacattctctgt
aggggggaaaagagaaaggttcgaggaactatccggccagacatggaaagtttcaaacgt
gcgaatatgccacctacacaactctttgaaaaggacagttcttacccgcctcagctttac
cagctttggtcaaagaatactcaagttcttcaaacctcatcatctgaatctcgacatcct
gatctccgtgcggaacaatctccagggtttgttcaggagagaatgcataaccaccatcaa
acagaccatcatgagcgcagtgacacaagctcccaaaatcttgatagtcccgcagaaata
ctccggacagttcgtactgggaaaggtgcttcagtagaaagcatgatggctggatctcga
gcaagccctgaaactattaaccgccaggctgctgatattaatgtcacgccattctattct
ggagatgatgtgagatccatgcctagtacaccatccgcacgtggagcagcttcaattaac
aacatagagatcagctctaaaagtcgcatgcccaatagaaaaagaccaaattcctcacca
agaagaggactcgaaccagtggcggaagagagaccgtgggagcaccgtgaatatgagttt
gagttttcaatgttacctgaaaaacgcttcacagccgataaagaaatactatttgaaact
gcatctacacagactcaaaagccagtgtgcaatcaatcagacgagatgataacagatagc
atcaaaagtcacctgaagacacactttgaaacacctggagctcctcaagtggaatctctt
aacaagctcgctgttggaatggacagaaacgctgcagctaaactcttcttccaatcctgt
gtgttagctactcgcggagtcatcaaggtaaaccaagcagagccttatggggacattctc
attgcaagaggacccaacatgtaa
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