KEGG   Arabidopsis thaliana (thale cress): AT5G05490
Entry
AT5G05490         CDS       T00041                                 
Symbol
SYN1
Name
(RefSeq) Rad21/Rec8-like family protein
  KO
K06670  cohesin complex subunit SCC1
Organism
ath  Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:ath00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ath03036]
    AT5G05490 (SYN1)
Chromosome and associated proteins [BR:ath03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   Cohesin complex
    AT5G05490 (SYN1)
SSDB
Motif
Pfam: Rad21_Rec8_N Rad21_Rec8
Other DBs
NCBI-GeneID: 830432
NCBI-ProteinID: NP_850773
TAIR: AT5G05490
UniProt: Q9S7T7
LinkDB
Position
5:1624206..1629269
AA seq 627 aa
MLRLESLIVTVWGPATLLARKAPLGQIWMAATLHAKINRKKLDKLDIIQICEEILNPSVP
MALRLSGILMGGVVIVYERKVKLLFDDVNRFLVEINGAWRTKSVPDPTLLPKGKTHARKE
AVTLPENEEADFGDFEQTRNVPKFGNYMDFQQTFISMRLDESHVNNNPEPEDLGQQFHQA
DAENITLFEYHGSFQTNNETYDRFERFDIEGDDETQMNSNPREGAEIPTTLIPSPPRHHD
IPEGVNPTSPQRQEQQENRRDGFAEQMEEQNIPDKEEHDRPQPAKKRARKTATSAMDYEQ
TIIAGHVYQSWLQDTSDILCRGEKRKVRGTIRPDMESFKRANMPPTQLFEKDSSYPPQLY
QLWSKNTQVLQTSSSESRHPDLRAEQSPGFVQERMHNHHQTDHHERSDTSSQNLDSPAEI
LRTVRTGKGASVESMMAGSRASPETINRQAADINVTPFYSGDDVRSMPSTPSARGAASIN
NIEISSKSRMPNRKRPNSSPRRGLEPVAEERPWEHREYEFEFSMLPEKRFTADKEILFET
ASTQTQKPVCNQSDEMITDSIKSHLKTHFETPGAPQVESLNKLAVGMDRNAAAKLFFQSC
VLATRGVIKVNQAEPYGDILIARGPNM
NT seq 1884 nt   +upstreamnt  +downstreamnt
atgttgagactggagagtttgatagtaacagtgtggggaccagcgacgcttctagctcga
aaagctccgttgggtcagatatggatggccgctacattgcacgcgaagatcaaccggaag
aaactagataagctcgatatcattcaaatctgcgaagagattttgaatccgtcggttccg
atggctcttagactctccgggattcttatgggtggtgttgtgattgtttatgagaggaaa
gtgaagctcctattcgatgatgttaatcgctttctggttgaaattaatggagcttggcgc
acaaaatctgttccggatcccactttactacctaaaggaaaaacccatgccaggaaagag
gctgttacattgcctgagaacgaagaagctgattttggagattttgaacagactcgtaat
gttcctaaatttggcaattacatggattttcagcagacttttatttccatgcggttagat
gaatcccatgttaacaataaccccgagccagaagatcttggacagcagttccatcaagct
gatgccgagaatatcacactctttgagtatcatggttcattccagaccaacaatgaaaca
tatgatcgttttgaaagatttgacatcgaaggagatgatgaaacacagatgaactccaat
ccaagagaaggcgctgaaatacctacaactctcatcccatcaccacctcgtcatcatgac
attcccgaaggagtcaaccccacaagccctcagcgccaggagcaacaggagaatcgtagg
gacggatttgctgagcagatggaggaacaaaacataccggacaaagaggaacacgataga
ccacaaccagcgaaaaagagagcaagaaagacagctacttcagcgatggattatgagcaa
actattatcgctggtcatgtttaccagtcatggctccaggatacttctgacattctctgt
aggggggaaaagagaaaggttcgaggaactatccggccagacatggaaagtttcaaacgt
gcgaatatgccacctacacaactctttgaaaaggacagttcttacccgcctcagctttac
cagctttggtcaaagaatactcaagttcttcaaacctcatcatctgaatctcgacatcct
gatctccgtgcggaacaatctccagggtttgttcaggagagaatgcataaccaccatcaa
acagaccatcatgagcgcagtgacacaagctcccaaaatcttgatagtcccgcagaaata
ctccggacagttcgtactgggaaaggtgcttcagtagaaagcatgatggctggatctcga
gcaagccctgaaactattaaccgccaggctgctgatattaatgtcacgccattctattct
ggagatgatgtgagatccatgcctagtacaccatccgcacgtggagcagcttcaattaac
aacatagagatcagctctaaaagtcgcatgcccaatagaaaaagaccaaattcctcacca
agaagaggactcgaaccagtggcggaagagagaccgtgggagcaccgtgaatatgagttt
gagttttcaatgttacctgaaaaacgcttcacagccgataaagaaatactatttgaaact
gcatctacacagactcaaaagccagtgtgcaatcaatcagacgagatgataacagatagc
atcaaaagtcacctgaagacacactttgaaacacctggagctcctcaagtggaatctctt
aacaagctcgctgttggaatggacagaaacgctgcagctaaactcttcttccaatcctgt
gtgttagctactcgcggagtcatcaaggtaaaccaagcagagccttatggggacattctc
attgcaagaggacccaacatgtaa

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