Arabidopsis thaliana (thale cress): AT5G05540
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Entry
AT5G05540 CDS
T00041
Symbol
SDN2
Name
(RefSeq) small RNA degrading nuclease 2
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
AT5G05540 (SDN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ath03009
]
AT5G05540 (SDN2)
Ribosome biogenesis [BR:
ath03009
]
Eukaryotic type
Pre-60S particles
RNases
AT5G05540 (SDN2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
DUF2536
Motif
Other DBs
NCBI-GeneID:
830437
NCBI-ProteinID:
NP_196173
TAIR:
AT5G05540
UniProt:
Q9FFG1
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All DBs
Position
5:1636282..1638939
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AA seq
466 aa
AA seq
DB search
MEDVLATAEGVVLVKLVKVAQKLGLKGENGTWKEFLDFYDKQLGSSSLSDPSKRRKDDLV
AFLTTLKKKEDLQLLAKSLKLDNDVFEKFKKKSLDETAEQRLVRMTLTHDEYPLDYLFPS
NAEDWVRTGLGKKKMEPTKIEMIAIDCEMVLCEDGSEAVVRVAAVDRDLKVILDEFVKPN
QPVVDYRTFITGLTAQDLEKATISVVDIQEKLLMFISEDTILVGQSLNHDLKVLKVDHAR
VIDTSLVFKYNYDGTRRPLRLKRPSLNYLCKCILGYEVQKEGVPHNCVHDAEAAMKLVLA
ILDNGAETSVPLSKEMLEAEKSKLYLHRIPCNVPYEELNGVVSRDIPHEVKPSKKQDRHY
YSAIVVFKSPEEANQAFENIAGDFGKDSRGLSQKQIFLEPSSSEPRLYVLVRKMVEDDLV
GEVIAEENNASSKKRKRENHSKGTRDRRRCKPLSRRKQRSNVKRRR
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgtgctagccacggcagagggagtggttttagtaaagctggtgaaggtagcg
caaaagctaggtctaaaaggtgaaaacggaacttggaaggagtttttagatttttatgac
aaacagctaggatcttcgagcttaagtgatccttcaaagcggcgcaaagatgatttggtg
gcttttcttactacactcaagaagaaagaagatttgcagctgttggctaagtctctcaaa
ctcgacaatgatgtttttgagaaattcaaaaagaaatctttggatgagacagctgagcag
aggctagttcgaatgactcttacgcatgatgagtacccattagactatttgttcccatct
aacgctgaggattgggttagaacagggcttggcaagaagaagatggaaccgacaaagatc
gaaatgattgccattgattgtgagatggttctttgtgaagatgggagtgaagctgttgtt
agagttgctgcagttgaccgtgatttaaaggtgattcttgatgagtttgtgaaaccgaat
caaccggttgttgactataggactttcattactggacttactgctcaagatcttgaaaag
gctactatatctgtggtagatatacaggaaaaattgctgatgtttatctctgaggataca
attttggttggtcaaagtttgaaccatgatctaaaagtattgaaggtggatcatgccaga
gtaattgatacttcacttgtgtttaagtataactatgacggtacaagaaggcctttaaga
cttaaaagaccttctttgaattatctgtgcaagtgtatattgggatatgaagtgcagaaa
gaaggtgttccacacaattgtgttcatgatgcagaagctgcaatgaaacttgtacttgct
atactagataatggagcagagacctccgttccactatctaaagagatgttggaagctgag
aagtcaaagctctaccttcatagaatcccttgcaatgttccatatgaagagttaaatgga
gtcgtttccagggatatcccacatgaagttaagccgtcgaaaaaacaagaccgtcactac
tatagcgcgattgttgtttttaaaagtccagaagaagcaaatcaagcatttgaaaacatt
gctggagactttggaaaggattcgagggggttgtcacaaaaacagatctttctagagccg
agttcatcagaacctagattatatgttctcgttcgtaaaatggtcgaagatgatttggtt
ggggaagtcatagcagaggagaataatgcgagttctaagaaacggaagagagaaaatcat
tctaaagggaccagagatagacgcaggtgtaaaccattgtccagacgaaaacagagaagc
aatgtcaaacgaagaagataa
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