Arabidopsis thaliana (thale cress): AT5G09280
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Entry
AT5G09280 CDS
T00041
Name
(RefSeq) Pectin lyase-like superfamily protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath00040
Pentose and glucuronate interconversions
ath01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
AT5G09280
Enzymes [BR:
ath01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
AT5G09280
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
830787
NCBI-ProteinID:
NP_196490
TAIR:
AT5G09280
UniProt:
Q9FY87
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All DBs
Position
5:complement(2880423..2881597)
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AA seq
297 aa
AA seq
DB search
MTGNIGKGVTQYKVTDPSDDPLNPKPGTLRYGATLVKGKKWITFKRNMKIKLHKPLLISS
FTALDGRGASVHISGPACLIVYRATDVIIHGLKIHDCKAHPPSSVMGPDSKIIQLGHMDG
DAIRLVTAKKVWIDHNTLYDCEDGLLDVTLGSTDVTVSNNWFRNQDKVMLLGHDDGYVKD
KDMRVTVVFNHFGPNCNQRMPRVRHGYAHVANNYYQGWTQYAIGGSMSPRVKSESNYFVA
PKSGSKEVLEKHGPITAQIKGSQSQTLNRLKYSLLQPERYTAPETPSVSTTTLNMTF
NT seq
894 nt
NT seq
+upstream
nt +downstream
nt
atgacgggaaatatcggtaaaggagtcacacaatacaaagtaaccgacccgtctgatgat
cctctgaaccctaaacctggaaccctaagatacggagcaacactcgtcaaaggtaaaaaa
tggatcacattcaaaagaaacatgaagatcaagcttcataaaccgcttctaatcagcagc
ttcacggcactcgatggtcgaggtgctagtgttcacatctcgggtcccgcttgcctcata
gtctatagagccaccgatgtgatcattcatgggcttaagatccatgattgtaaagctcat
ccaccaagctcagtgatgggacctgactcaaagatcatccaacttggacacatggatggc
gacgctatcaggctagtcacggctaagaaagtatggatcgaccacaacactctctatgat
tgcgaagacggtcttctagatgtcacactagggagtactgacgtcacagtgtcgaacaat
tggtttaggaaccaggacaaggtcatgcttcttggacatgatgatggctatgtaaaagac
aaagatatgagggtaactgttgtgtttaaccactttggtcctaattgcaaccagagaatg
ccaagagtgagacatggatatgctcatgttgccaataactattaccaaggatggactcaa
tatgcaattggaggaagcatgagccctcgtgtaaagagtgaatcaaactatttcgtggca
ccaaaatccggaagcaaagaggtgttggaaaagcacggcccaattacggcccagatcaaa
ggttcacagtcgcaaacgctaaacaggttaaagtactcacttcttcagccggagcgttac
actgcaccagaaactccgtctgttagtacaacaacgcttaacatgactttttag
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integrated database retrieval system
