Arabidopsis thaliana (thale cress): AT5G09860
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Entry
AT5G09860 CDS
T00041
Symbol
THO1
Name
(RefSeq) nuclear matrix protein-like protein
KO
K12878
THO complex subunit 1
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03013
Nucleocytoplasmic transport
ath03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
AT5G09860 (THO1)
09122 Translation
03013 Nucleocytoplasmic transport
AT5G09860 (THO1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT5G09860 (THO1)
03041 Spliceosome [BR:
ath03041
]
AT5G09860 (THO1)
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
AT5G09860 (THO1)
Spliceosome [BR:
ath03041
]
Complex C
Other components
EJC/TREX
AT5G09860 (THO1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
AT5G09860 (THO1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
CarD_C
CENP-X
Motif
Other DBs
NCBI-GeneID:
830846
NCBI-ProteinID:
NP_568219
TAIR:
AT5G09860
UniProt:
Q93VM9
A0A7G2F709
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All DBs
Position
5:3066562..3070989
Genome browser
AA seq
599 aa
AA seq
DB search
MDAFRDAILQRAPIETFALKTVQHFIQPQKQTKLAQDENQMLENMLRTLLQELVAAAAQS
GEQIMQYGQLIDDDDDDDDIHGQIPHLLDVVLYLCEKEHVEGGMIFQLLEDLTEMSTMKN
CKDVFGYIESKQDILGKQELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFP
LSERSAVNIKGVFNTSNETKYEKDPPKGISVDFNFYKTFWSLQEYFCNPASLTSASTKWQ
KFSSSLAVVLNTFDAQPLSEEEGEANSLEEEAATFNIKYLTSSKLMGLELKDSSFRRHIL
LQCLIMFDYLRAPGKNDKDLPSETMKEELKSCEDRVKKLLEITPPKGKEFLRAVEHILER
EKNWVWWKRDGCPPFEKQPIDKKSPNAGQKKRRQRWRLGNKELSQLWRWADQNPNALTDS
QRVRTPDIADYWKPLAEDMDPSAGIEDEYHHKNNRVYCWKGLRFTARQDLEGFSRFTEMG
IEGVVPVELLPPEVRSKYQAKPNEKAKRAKKEETKGGSHETEGNQIGVSNSEAEAEGGRG
DAETMESDAIADTPTPEEQQRLGGSDTENGQEAGQIEDGETEEAGLMDTDLDHPPMPVS
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atggatgcatttagagatgctatattgcagcgagctccaattgaaacctttgcactcaag
actgttcaacactttatacaacctcagaaacaaacaaagttggctcaagatgaaaaccaa
atgcttgaaaacatgctccggacattgctgcaggagctagtggctgctgctgcgcaatca
ggggagcaaattatgcagtatggtcagttgattgacgatgatgatgatgatgatgatata
catggacagattcctcatcttctagatgttgtgctttatctttgtgagaaagagcatgta
gaaggtggcatgatattccagctgctggaggatttgaccgaaatgtctactatgaaaaac
tgtaaagatgttttcggttatattgaaagcaaacaagatatattgggcaagcaagagctt
tttgcacgcggaaaacttgtcatgttgaggacttgcaaccaacttctccgccgactctca
aaggccaatgatgttgtattctgtggaaggattcttatgtttttggctcacttttttccg
ttatctgagcgctcagccgtcaatataaaaggtgtttttaatacatctaatgaaaccaaa
tatgaaaaagatcctccaaaaggcatttctgtagatttcaacttctacaagacattttgg
agtttacaggagtatttctgtaatcccgcttctcttacttccgcatctaccaagtggcag
aaattttcatccagtttggcggttgttttaaacacctttgatgctcaaccactaagcgaa
gaagagggagaggctaatagtttggaggaagaggcagcaacttttaatataaagtaccta
acaagtagtaaattgatgggtttagagttaaaggattcgagtttccgacgacatattctt
ctccagtgcctcattatgtttgattatctaagggcaccagggaagaacgacaaagatctg
ccatctgaaaccatgaaggaagaacttaagtcatgtgaggatcgtgtaaagaaattgctt
gagatcactccgcctaaagggaaagaattcctccgtgcagttgagcatatactggagcgc
gaaaagaattgggtctggtggaaacgtgatggatgtccaccatttgaaaagcaaccgata
gataagaaatcacctaatgcagggcaaaagaaacggagacaaagatggagattgggaaat
aaagaactctcccaactttggagatgggcagatcaaaatccgaatgctttgactgattct
caacgcgtgcgaacccctgatattgcagactactggaaaccattagcagaagatatggat
ccatcagctggcatagaagatgagtaccatcataaaaacaacagagtttactgctggaaa
ggtcttcggtttacagctcggcaagaccttgaaggattttctaggtttactgaaatggga
atcgaaggagttgtcccagttgaactattgccgcctgaggtccggtccaaataccaagct
aaaccaaacgaaaaagccaaacgagcgaagaaagaagaaaccaaaggtggatctcatgaa
acagagggaaaccagattggtgtttctaatagtgaagctgaagctgaaggaggaaggggt
gatgcagagacgatggagagtgatgctattgcagacactcctacgcctgaggaacagcaa
agactcggtggttctgatacagaaaacggtcaagaggccggtcaaatcgaagacggagag
acagaagaagctggtctgatggacactgatcttgatcatcctcctatgcccgtctcatga
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integrated database retrieval system
