Arabidopsis thaliana (thale cress): AT5G09880
Help
Entry
AT5G09880 CDS
T00041
Name
(RefSeq) Splicing factor, CC1-like protein
KO
K13091
RNA-binding protein 23/39
Organism
ath
Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ath03041
]
AT5G09880
Spliceosome [BR:
ath03041
]
Common components
Common spliceosomal components
General mRNP proteins
AT5G09880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_7
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
830848
NCBI-ProteinID:
NP_568220
TAIR:
AT5G09880
UniProt:
Q93Y25
LinkDB
All DBs
Position
5:complement(3081389..3085291)
Genome browser
AA seq
527 aa
AA seq
DB search
MEFDEYEYLEKTVEEGAGSNKKKEESGNERSERSYRKREGGERQGEEGGEEERVSSRSKK
SRGDGEENGGGKRDRERERHRSSRDKDRERDKVREGSRDKESDRERSSKERDRSDRDKPR
DRERREREKRSSSRSRREEKEPEVVERGSRRHRDKKDEPEADPERDQRTVFAYQMPLKAT
ERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLFLGQPVMV
KPSEAEKNLAQSNSTTVGGTGPADRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDP
ETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAGRTIKVSSVSDHIGTQDSAPKSADFDD
DDGGGLALNAQSRAMLMQKLDRSGIATSIVGSLGVPGLNGAAFNQPGMNPSFPTSVLPTT
AIPSFVNEHVGLPSECLLLKNMFDPATETEPNFDLEIRDDVADECSKYGPVNHIYVDKNS
AGFVYLRFQSVEAAAAAQRAMHMRWFAQKMISATFMPPHEYEAKAKA
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atggagtttgacgaatacgagtacctggagaagacggttgaggaaggagctgggtcgaat
aagaaaaaggaagagagtgggaacgagaggagcgagaggagttacagaaagagagaagga
ggagagaggcagggggaagaaggaggtgaagaagagcgggttagcagtcggagtaagaag
tctcgcggagacggcgaagagaacggtggtggtaagagggatcgggagagagagaggcat
aggagcagcagagacaaggatagggagagggataaggttagagaaggatcgagagataaa
gagagcgatcgagagaggagtagcaaggagagagataggagcgatagagacaaaccccga
gacagagagagaagagagagggagaagaggagcagcagtagatctcggagggaagagaag
gaacccgaagtagtggaaagaggaagcagaagacacagggacaagaaagatgagcctgaa
gcagatccagagagagatcaaagaactgtttttgcatatcagatgcctcttaaagctacg
gagagagatgtttatgagttcttctccaaagcgggcaaggtgagggatgtgcgattgatc
atggacagaaattcaagacgatcaaaaggcgtcgggtatattgagttttatgacgtgatg
tcagttccaatggccatagctctgtctggacaactgtttcttggacaacctgtgatggtt
aagccctctgaagctgaaaagaatctggcccaatctaacagcactacggttggtggtaca
ggccctgcagataggaaactctatgtgggtaacctgcatttcaacatgtcggaactgcag
cttagacagatttttgaggcatttggtcccgttgagcttgttcagctaccacttgatcct
gaaactgggcagtgcaaaggatttggatttattcagtttgttcaacttgaacattcaaag
gcagcacaaattgccttaaatggaaagctggagattgctggtaggacaatcaaggtttct
tccgtctctgatcatattggtacacaagattctgctccaaaatctgctgattttgatgat
gatgatggaggtggactggctttaaatgcacaatctagggctatgcttatgcagaagctg
gatcgttcaggtatcgctacaagcattgtgggctctcttggagtaccagggctaaatgga
gcagcgtttaatcaaccaggcatgaatcctagtttcccaacatcagtgcttccgacaaca
gcaatcccttcttttgtcaatgaacatgttggtctgccaagcgaatgccttctattgaag
aatatgtttgatcctgcaaccgagacggaaccaaactttgatcttgaaatcagagacgac
gttgcggatgaatgttcaaagtatggcccagtcaaccatatatacgtagacaagaacagt
gcggggtttgtgtatctgaggtttcaatcagtggaggcagcagcagcagctcaaagagca
atgcatatgagatggtttgcacaaaagatgatatctgcaactttcatgcctcctcatgaa
tatgaagccaaagccaaggcctga
DBGET
integrated database retrieval system
