Arabidopsis thaliana (thale cress): AT5G10960
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Entry
AT5G10960 CDS
T00041
Name
(RefSeq) Polynucleotidyl transferase, ribonuclease H-like superfamily protein
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AT5G10960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT5G10960
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
AT5G10960
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
AT5G10960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
830963
NCBI-ProteinID:
NP_196657
TAIR:
AT5G10960
UniProt:
Q9LEU4
A0A654G096
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Position
5:3464098..3466314
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AA seq
277 aa
AA seq
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MAETLKEDSIMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDL
NYRTLKENVDLLKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIEL
LRQCGIDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELP
LKQADFFKLLYVYFPTVYDIKHLMTFCNGLFGGLNRLAELMGVERVGICHQAGSDSLLTL
GSFRKLKERYFPGSTEKYTGVLYGLGVEDGTTTTVAN
NT seq
834 nt
NT seq
+upstream
nt +downstream
nt
atggcggagactttgaaagaagattcgattatgattcgagaggtttgggattacaatttg
gttgaagaattcgcgttgatccgtgagattgttgacaaattcagctatatcgctatggat
actgagtttccaggtgtggttttgaagcctgttgctactttcaagtacaataacgatctt
aactacaggactctcaaggaaaatgtcgatttgttgaaattgattcaagttgggttaact
ttttctgatgagaatgggaatcttccgacttgtgggacggataagttctgcatctggcaa
ttcaatttccgtgagttcaacatcggtgaggatatctacgcgagtgagtctattgagctg
ttgcgtcagtgtgggattgatttcaagaagaacattgagaaaggtattgatgtggttagg
tttggtgagcttatgatgtcgtctgggattgttttgaacgatgctatctcgtgggttacg
ttccatggtggatatgatttcgggtatttggttaagttgttgacttgtaaggaattgcct
ctcaagcaagctgatttcttcaagcttctgtatgtgtatttccctacggtttacgatatc
aagcacttgatgacgttctgcaacggactgtttggtggattgaacagacttgcggagctt
atgggagtggagagagttgggatttgtcatcaagctgggtcggatagcttgctcacctta
gggtcgtttaggaagctcaaggaacgttatttcccgggatcaactgagaaatacactgga
gtcttgtatggtctaggtgtggaagatggtactactactactgttgctaattaa
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