Arabidopsis thaliana (thale cress): AT5G11200
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Entry
AT5G11200 CDS
T00041
Symbol
UAP56b
Name
(RefSeq) DEAD/DEAH box RNA helicase family protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03013
Nucleocytoplasmic transport
ath03015
mRNA surveillance pathway
ath03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
AT5G11200 (UAP56b)
09122 Translation
03013 Nucleocytoplasmic transport
AT5G11200 (UAP56b)
03015 mRNA surveillance pathway
AT5G11200 (UAP56b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT5G11200 (UAP56b)
03041 Spliceosome [BR:
ath03041
]
AT5G11200 (UAP56b)
Enzymes [BR:
ath01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AT5G11200 (UAP56b)
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
AT5G11200 (UAP56b)
Spliceosome [BR:
ath03041
]
Complex C
Other components
EJC/TREX
AT5G11200 (UAP56b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
AT5G11200 (UAP56b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
830990
NCBI-ProteinID:
NP_568245
TAIR:
AT5G11200
UniProt:
Q56XG6
Q9LFN6
A0A178UKF1
LinkDB
All DBs
Position
5:3567174..3571039
Genome browser
AA seq
427 aa
AA seq
DB search
MGDARDNEAYEEELLDYEEEDEKVPDSGNKVNGEAVKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVL
CHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLAL
AREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSR
AAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQERFEVDIKELPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggagacgctagagacaacgaagcctacgaggaggagctcttggactatgaagaagaa
gacgagaaggtcccagattctggaaacaaagttaacggcgaagctgtgaaaaaagggtac
gtgggaatacacagttctggattcagagacttccttttgaaaccggagcttctcagagct
attgttgactcaggatttgaacatccatctgaagtgcaacacgaatgtatccctcaagct
atcttgggtatggatgttatctgccaagcaaagtctggtatggggaagactgctgtgttt
gtcctgtctactctacaacagattgaaccatctcctggccaggtttctgcacttgtcttg
tgccatacaagagagctagcttaccagatctgcaatgagtttgtgcgattcagtacctat
ctgcctgatacaaaagtttcggtgttctatggtggagtcaacattaaaattcacaaagac
ttgctgaagaatgaatgtcctcacattgttgttggtacccctggtcgagtgcttgcactt
gccagggagaaagatctctctttgaagaatgtgaggcattttattcttgatgagtgtgat
aaaatgctcgagtcacttgacatgcgaagggatgtgcaggagattttcaagatgactcct
catgacaaacaagtaatgatgttctcagcaacgctcagcaaagagatacgcccagtctgc
aagaagtttatgcaagatccaatggaaatatatgttgatgatgaagccaagttgactctt
catggacttgtccagcactacatcaaactgagcgagatggagaaaaatcgcaagttgaat
gaccttcttgatgcgttggacttcaatcaagttgtcatttttgtgaagagcgtgagcagg
gctgcggagctgaacaagttactggtggaatgcaatttcccctcaatatgcatacactct
ggcatgtctcaagaagagaggttgactcgatacaaaagtttcaaggaagggcacaagagg
atccttgtggcgactgacttggtaggaagagggattgacatagagcgtgtcaacattgtt
atcaactatgacatgccagattctgcggatacctatcttcatagggttgggagagctggt
agatttggaaccaagggtcttgcaatcacatttgttgcatctgcttcagattcagaggtc
cttaatcaggttcaagagaggtttgaggtcgatataaaggagcttcctgagcagattgat
acatcgacttacatgccgtcttaa
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