Arabidopsis thaliana (thale cress): AT5G11880
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Entry
AT5G11880 CDS
T00041
Name
(RefSeq) Pyridoxal-dependent decarboxylase family protein
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath00300
Lysine biosynthesis
ath00470
D-Amino acid metabolism
ath01100
Metabolic pathways
ath01110
Biosynthesis of secondary metabolites
ath01230
Biosynthesis of amino acids
Module
ath_M00527
Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
AT5G11880
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
AT5G11880
Enzymes [BR:
ath01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
AT5G11880
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
Motif
Other DBs
NCBI-GeneID:
831061
NCBI-ProteinID:
NP_568252
TAIR:
AT5G11880
UniProt:
Q94A94
A0A654G0X9
Structure
PDB
PDBj
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All DBs
Position
5:complement(3827526..3830228)
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AA seq
489 aa
AA seq
DB search
MAAVTQFLSQPSSIRGTLNQYQLNQTSLSRIPFLSLKSTLKPLKRLSVKAAVSQNSTKTL
TKESASSFDHCFKKSSDGFLYCEGTKVQDIMETVEKRPFYLYSKPQITRNLEAYKEALEG
VRSVIGYAIKANNNLKILEHLRSLGCGAVLVSGNELRLALLAGFDPTKCIFNGNGKSLED
LVLAAQEGVFVNVDSEFDLNNIVEASRISGKQVNVLLRINPDVDPQVHPYVATGNKNSKF
GIRNEKLQWFLDEVKAHPKELKLVGAHCHLGSTITKVDIFRDAAVLMIEYIDEIRRQGFE
VSYLNIGGGLGIDYYHAGAVLPTPMDLINTVRELVLSRDLNLIIEPGRSLIANTCCFVNH
VTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPTPPEAEVTKFDVVGPVCESAD
FLGKDRELPTPPQGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVEEDGSITKIRHAETFD
DHLRFFEGL
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagttactcaatttctctcccaaccttcatcaatccgcggaaccctaaatcag
taccaattgaatcagacttcactctcaagaatcccatttttgtctctcaagtcaacattg
aagccacttaaacgcctctccgtcaaagccgccgtttcccaaaactccaccaaaaccctc
acgaaagaatctgcttcctctttcgaccactgtttcaagaaatcatcagatgggtttctc
tattgcgaaggaaccaaggttcaagatatcatggaaacagtcgagaaacgacccttttac
ttatatagcaaacctcagatcacgagaaaccttgaggcttataaagaggctttggaagga
gtgagatctgttattggttacgctattaaagctaataacaatctcaagattttggagcat
ttgaggagtttgggctgtggtgctgtgttggttagtggaaatgagctcaggcttgctctt
cttgctggtttcgatcccacaaagtgtattttcaatggaaatggaaagtctttggaagat
ttagttctagctgctcaagaaggtgttttcgtaaatgttgatagtgagtttgacttgaat
aacattgtggaagcttcaagaatttctggtaagcaggtcaatgtgttgttgcgtatcaat
cctgatgttgatcctcaggtgcatccatatgtagctactgggaacaagaactcgaagttt
ggtattaggaacgagaagcttcaatggtttctggatgaagtgaaggcacatcccaaagag
ctgaagcttgttggagctcattgtcatcttggttctaccattacaaaggtggatatattc
agagatgctgcggttctcatgattgaatacattgatgaaatccggcgtcaaggctttgag
gttagctacttgaacattggtggtggtttagggatagattattatcatgccggcgctgtc
cttcctacacccatggatcttatcaacaccgtaagagagctggttctttcacgagacctg
aatctaataatcgagccagggagatcactgattgcaaacacatgttgtttcgtcaaccat
gtaactggtgtgaagacgaatggaactaaaaacttcatagtgattgatggaagtatggct
gagcttatccgtcccagtctttatgatgcctatcagcatattgagttggtctctcctaca
ccgcctgaagcagaggttaccaaattcgatgtagtgggtcctgtttgtgaatctgctgat
ttcttgggcaaagacagagagcttcccactcctccacagggagctggtctggtggttcat
gacgctggtgcatactgtatgagtatggcttccacttacaatctcaagatgcgtcccccg
gaatactgggttgaagaagatgggtcgatcactaagatcaggcatgctgagacattcgat
gaccatttacgtttctttgaaggactatga
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