Arabidopsis thaliana (thale cress): AT5G12980
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Entry
AT5G12980 CDS
T00041
Name
(RefSeq) Cell differentiation, Rcd1-like protein
KO
K12606
CCR4-NOT transcription complex subunit 9
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AT5G12980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT5G12980
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
AT5G12980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rcd1
Roquin_1_2-like_ROQ
Motif
Other DBs
NCBI-GeneID:
831138
NCBI-ProteinID:
NP_196802
TAIR:
AT5G12980
UniProt:
A0A178UJH3
Q9LXU1
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All DBs
Position
5:complement(4105383..4108232)
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AA seq
311 aa
AA seq
DB search
MANLPPPLSMKSVALSGASSPSSSSNNDRKLSSAEQLILDLSNPELRENALHELSKKREI
FQDLAPLLWHSVGTIPALLQEIIAVYPALSPPTMTPAQSNRVCNALALLQCVASHTDTRM
LFLKAHLPLYLYAFLNTSSKSRPFEYLRLTSLGVIGALVKVDDTEVIRFLLQTEIVPLCL
RTMENGSELSKTVATFIVQKVLLDDVGLEYMCTTAERFFALGRVLGNMVTSLAEGPSARL
LKHIIRCYLRLTDNPRACDALGSCLPDLLRDATFSGCLYDDPPAMQWLQQLLHNVNVGGR
APQGLAHMFVN
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atggctaatcttcctcctccgctctccatgaaatctgtcgccctctcaggagcttcttct
ccttcttcttcctccaacaacgatcggaagctatcatcggcggagcagttaattctcgat
ctcagcaatcccgaactcagagaaaatgcacttcacgagttgtctaagaagagagagatc
tttcaagatttggctccgcttttatggcattctgttggtaccattcctgctcttctacag
gagattatcgcagtttaccctgccctatctcctccaaccatgactcctgctcaatctaac
agggtgtgcaatgcacttgctcttcttcagtgtgttgcttctcatactgatacgagaatg
ttgttcctaaaagcccatctgccattgtacctgtatgctttcttgaatacatcaagcaaa
tcaagaccgtttgagtacctgcggctgactagcttgggggttattggtgcacttgttaag
gttgatgatactgaagtgatcagattccttcttcaaactgagattgtcccattgtgcctc
cggacaatggagaatggcagcgagttatcaaagactgttgctactttcattgttcagaaa
gttttgctggacgatgttgggcttgagtacatgtgcacgacagcggagagattctttgct
ctgggtcgggttttgggaaatatggttacttcacttgcagaaggaccgtccgctaggcta
ctaaagcacatcatacgctgctatcttcgcttgacagataaccccagagcatgcgatgca
cttggaagttgccttccagatcttctgagggatgctactttcagtggttgtctctatgat
gacccacctgcaatgcaatggctgcagcaactgctccacaacgttaacgttggcgggaga
gcacctcaagggttggctcatatgtttgtgaattaa
DBGET
integrated database retrieval system
