KEGG   Arabidopsis thaliana (thale cress): AT5G14900
Entry
AT5G14900         CDS       T00041                                 
Name
(RefSeq) helicase associated (HA2) domain-containing protein
  KO
K12820  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:5.6.2.6]
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    AT5G14900
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ath03041]
    AT5G14900
   03009 Ribosome biogenesis [BR:ath03009]
    AT5G14900
Enzymes [BR:ath01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     AT5G14900
Spliceosome [BR:ath03041]
 Complex A
  U2 snRNP components
   U2 related factors
    AT5G14900
 Complex B
    AT5G14900
 Complex C
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-SnRNP related factors
    AT5G14900
Ribosome biogenesis [BR:ath03009]
 Eukaryotic type
  90S particles
   Helicases
    AT5G14900
SSDB
Motif
Pfam: OB_NTP_bind HA2_C HA2_N X DUF272
Other DBs
NCBI-GeneID: 831342
NCBI-ProteinID: NP_196994
TAIR: AT5G14900
UniProt: Q9LFR5 A0A5S9Y4X1
LinkDB
Position
5:complement(4822676..4823581)
AA seq 301 aa
MTNLANTVLTLKGLSVKNLVRFDLIDSPAPDTLARALDDLYHLGALDDDCNLTKTGEMMS
EFPLDPQMAKMLIVSPQFNCSNEILSISAMLSVPNCFIRPRGEAQKAADEAKSSFAHIDG
DHLTLLNLFHAFLQNNQDPNWCCTKFINYRAMKSAVSVREQLVRIMLRFQIKLCSPDFNS
RDYYVNIRKALLAGYFMQVAHLERTGHYLTFRDKDDQVVHLHPSNCLDHKPEWVVYNEYV
FTSRNFIRTVTHIRGEWLVDVAPHYYKLANFPSSEAKRVLERHYKKRKLSEERSCKLYSN
S
NT seq 906 nt   +upstreamnt  +downstreamnt
atgacaaaccttgcaaacacagttctgaccttgaaaggacttagtgtgaaaaacttggta
cgcttcgatcttatagattctcctgctcctgataccctcgctcgggccttggacgatttg
tatcatttgggagcacttgatgatgactgtaacttgacaaagacaggtgagatgatgagt
gagtttcctttagacccacagatggcaaagatgctcatagtcagtcctcaattcaactgc
tcaaacgagattctttcgatttctgcgatgttatcagtaccaaattgtttcatcaggcca
agaggagaagctcaaaaagcagcagatgaagccaaatctagctttgcacacattgatgga
gatcatctcacacttttgaatttgttccatgctttcttgcaaaacaaccaagacccaaat
tggtgctgtacaaagttcatcaactacagagcaatgaagtctgcagttagtgttagagag
cagttggtccggatcatgttgaggtttcagattaagttgtgtagccctgatttcaacagc
agggactactacgtcaacataagaaaggccttgcttgcaggttatttcatgcaagtggct
cacctagaacgcactggccactacttgactttcagagataaggatgaccaagtggtgcac
ttgcatccttccaattgcttggatcacaaaccagagtgggtagtttacaacgaatacgtt
ttcactagccgaaatttcatccgaaccgtcacacatattcgcggtgaatggcttgtagat
gttgcaccacattactataagcttgctaactttcccagttctgaggccaaacgagttctt
gaaaggcactataagaagagaaaactgtcagaagagaggagttgtaaattgtatagcaat
tcttaa

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