Arabidopsis thaliana (thale cress): AT5G16280
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Entry
AT5G16280 CDS
T00041
Name
(RefSeq) Tetratricopeptide repeat (TPR)-like superfamily protein
KO
K20305
trafficking protein particle complex subunit 8
Organism
ath
Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ath04131
]
AT5G16280
Membrane trafficking [BR:
ath04131
]
Endosome - Golgi transport
Tethering complex
TRAPP complex II
AT5G16280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAPPC-Trs85
Ig_TPPC8_C
TRAPPC9-Trs120
SNAP
Motif
Other DBs
NCBI-GeneID:
831488
NCBI-ProteinID:
NP_001318572
TAIR:
AT5G16280
UniProt:
F4KCQ9
LinkDB
All DBs
Position
5:complement(5323133..5331694)
Genome browser
AA seq
1271 aa
AA seq
DB search
MVEPVNSSLGKMLLEEISPVVMVLCTPLVEDTFLRNGLSFVETLKPFCNFSNIDVPVRTS
SDQLYRLKKFTLRLFYASDIKQPNVEVAKQRLERVITQAGEKDFQDLKSDPPQITDILSN
PESEIAPSWFRYYNKELIRTLSFSDHEAFDHPVACLLVVSSKDEEPIKKFVDLFNSNRLP
TDGTMDPNILKHYLLVHDNQDATTERTSKVLSEMRSQFGNNECNLLCTNSSKEGNVEHQA
NPWASFKSSVSADKLGCALTGDDIVEIKDLMQEFASRHIIPYMEQKVRELNQQISATRKG
LKNQFKNFLWRKGKDDNPDATKGSMYTYSSTESQIRILGDYAFMLHDYELALSSYRLIYT
DYNIDKAWKHYAGVQEMRGLAYFISDQPKKDSECMENAFSTYMKLGKSGFQNATRCGLWW
AEMLKARDQHKEAASVYFRICGEEPLHAAVMLEQASYCFMLTKPAMLHKYGFHLVLSGDH
YKNCNQVNHAIRTYKSAISVYKSTTWSHIKDHLYFHIGQWYAIVGMHDVAVRNMLKVLDC
GYQSKATQEIFLRDFFDIVKKTGMKHEVVGLQLPILNMSSLQVIYEDHRTYASQASALVE
ESIWQSLEDDIIPSLNSGKSNWLELQSKLLPKKYKESNVCVAGESVKLDLEFRNPLLIST
SITSVSLICELTANSDDLKLDNEPSGSSLSPEISTEHNQVTTSGFSSFTLSEVDFTLGGG
EKKLVRLTVTPSEEGILKIVGVRWELSGSIVGVHYFQSVSVKAKTARGRRKNKLTPTDAL
KFLVIKSLPRLEGSIDHLPEKLYAGDLRYLVLELRNKSESPTKNLKMKISHPRFVSPGNH
EEELTTEFPDCLKKGDEHNIVQRESNRTSSVFAFPKDVSLQGDRSLRWPLWLRAAIPGTI
SLYFTIYYEMENVSSMKYRTLRMHYNLQVLPSLQTSFKVTPSPSRLQEFLVRMDIVNRAK
SDCFQIHQLSTVGCRWGISLLQPVDTILPSKFLLAGQALSCFFMIKDCRKSGTEDEETTS
LPPSQTDVKLYTQDDDEKLFDIVSSPLASFHESERSCQGPSVQVSPNTVDFILISRLAKS
SSPSAVPDLPKILSHHSCHNSIRSSSPISWSLDGPQTIHHDFSTSLCEIKLKMVIRNTSD
GISSVTINTNDFLPDAAATTSSSGNQSGWRYVPTITEEMKLTSDVMGSRLGKPPSSMESS
PPFIWSGLSSTKIQIQPLSTTEIPLQISVFSPGIYDLSSYELNWELSEHESATSSGTCQG
YPYYLTVLQSE
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
atggtggagccggtgaactcttcgcttgggaaaatgctattggaggaaattagtccagtg
gtcatggttctatgtacgcctcttgttgaagatactttcctcaggaatggcttatccttt
gtggaaacgctcaagccattctgcaactttagtaacatcgatgtgcctgttcggacatcg
agcgatcagctgtatcggctaaagaagtttacattaagattgttttatgcctccgatata
aagcaaccaaacgtagaggttgctaagcaacggctagaacgtgttattactcaagctggg
gagaaggattttcaggatttgaaatctgaccctcctcaaattactgatatactctctaat
ccagagtctgaaattgcaccctcatggtttcggtattacaataaagaacttatacgtaca
ttgtcgttttcagaccacgaagctttcgatcatcctgtggcatgtctattggtcgtttca
tcaaaagatgaagaacctataaaaaaatttgtagatcttttcaactccaatagattacct
actgatggtacaatggacccaaacattttgaagcattacttgttggtgcatgacaatcaa
gatgcaacaacagagagaacgtctaaagttctgtcagagatgagaagtcaatttggaaat
aatgaatgcaacttactttgcactaattcatctaaagaggggaacgtggaacatcaggct
aatccctgggcttcatttaaatcaagtgtttcggccgacaaacttggatgtgctctcact
ggtgatgatattgtggagatcaaagatctgatgcaagagtttgcttcaaggcatataatt
ccttacatggagcagaaagttcgagaacttaatcaacagatttctgcaacaaggaaaggt
cttaaaaatcaatttaaaaactttttgtggagaaaaggaaaagacgataatccggatgcc
accaaaggttctatgtatacatatagctcgaccgaatctcaaattagaattttgggtgac
tacgccttcatgttgcatgattatgaacttgcattgtcaagctatcggttaatatataca
gactataatatcgataaagcttggaaacactatgctggtgttcaggaaatgaggggactt
gcatatttcatctcagaccagccaaaaaaggattctgagtgcatggaaaatgcattcagc
acttatatgaaacttgggaagtctggcttccaaaatgctacgagatgtgggctttggtgg
gcagagatgctaaaggctagagatcagcacaaagaagctgcttcggtttacttccgcata
tgtggagaggaacccttgcacgctgcagtcatgttggagcaagcttcttactgtttcatg
ttaaccaagccagcgatgttacacaagtatggatttcatctagttctctcaggagaccac
tataaaaactgtaatcaggttaaccatgcaattcgtacatacaaaagtgcaatctctgtt
tataaatcaactacatggagccatatcaaagatcatttatattttcatattggacagtgg
tatgcaattgttgggatgcatgatgttgcagttagaaacatgctcaaagtattggactgt
ggctaccaatccaaggcaacccaagagatttttctcagggactttttcgacattgttaag
aaaactggaatgaagcatgaggtggtgggacttcaactaccaattcttaatatgtcgtct
cttcaagttatatatgaagaccatcgcacttatgcatctcaagcttctgctcttgtagaa
gagagcatctggcaatcactggaggatgatatcatcccatcattaaattctggcaagtca
aactggctggaattacagtcaaagcttctgccaaagaaatacaaggaatcaaatgtttgt
gtcgctggagagtcggtgaaattggatctggagtttaggaatccattgctaatctctact
tccataacaagtgtgtctcttatctgtgaacttaccgcaaattctgacgacctaaaatta
gataatgagccaagtggctcaagcttgagtcctgagatttccacagaacataatcaggtt
acaacctctggtttttcttctttcactttgtctgaagtggacttcacattaggtggaggc
gagaaaaaattggtgagactcactgttacccccagtgaagaaggtatcctcaaaattgtc
ggtgtaaggtgggagttgtctggttccatcgtaggtgtgcattacttccaatctgtgtct
gtcaaggcaaaaactgcgagaggaagaaggaaaaacaaacttacacccactgatgccttg
aaatttttagtcatcaagagtctacccaggcttgagggttcaattgatcatctgcctgag
aaattgtatgctggagatttacgttatcttgttttagagttaagaaataagtcagaatcc
ccaacaaagaatcttaaaatgaagattagccatccaagatttgtaagtcctggaaatcat
gaagaagagctgacaaccgaatttccagattgcttaaagaagggcgatgaacataatatt
gttcagcgtgaaagtaatagaacaagtagtgtatttgcatttccaaaggatgtatcactg
caaggagacagatcattaaggtggcctctttggcttcgagctgccatcccaggaacaata
tctttgtattttacgatatactatgaaatggaaaatgtatcaagcatgaaataccgcacc
ctaaggatgcattataatttgcaggttttaccgtctctacagacctcgttcaaagtcacc
ccatctccatcaagattgcaagaatttcttgtgcgtatggatatcgtgaaccgtgcgaag
tcagattgtttccaaattcaccagttgtcaacagttgggtgccggtggggtatctcattg
cttcagcctgttgatacaatcttaccttccaaatttctactcgctgggcaagctttatct
tgtttcttcatgataaaggattgcagaaaatccgggactgaagacgaggaaaccacgtcc
cttcctcccagccaaactgatgtaaaattgtatactcaggatgacgatgaaaagcttttc
gatatcgttagctcacctttagcaagcttccatgaaagtgaaaggtcatgtcagggaccc
tcggttcaggtaagtccaaatactgttgacttcatcctaatctctcgcctggcgaaaagc
agcagtccatcagcagttcccgatttaccaaagattttgtctcaccattcatgtcataac
agtatcagaagctcgagcccgatctcgtggtcactagacggtccccaaaccatacaccac
gacttttcgacctccttgtgtgaaataaaactaaagatggtaatcagaaacacatctgat
ggaatatcatctgtgaccatcaacacgaatgattttctaccagacgcagcagcaactact
tcttcctctggaaaccaatccgggtggcgctacgtgccaaccatcacagaggaaatgaaa
ctaacttcagatgtgatgggaagccgtctgggaaaaccgccatcttccatggaaagctca
cctcctttcatatggtcaggtttaagttccacaaagatccaaatccagccattatccaca
accgaaataccgctgcagatatcagttttctctccaggtatctacgatctgtcttcatat
gaacttaactgggagctatctgagcatgaaagtgcaacatcatcagggacatgccaaggt
tatccttattaccttactgttcttcagtctgagtga
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