Arabidopsis thaliana (thale cress): AT5G18230
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Entry
AT5G18230 CDS
T00041
Name
(RefSeq) transcription regulator NOT2/NOT3/NOT5 family protein
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AT5G18230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT5G18230
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
AT5G18230
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
AT5G18230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
831941
NCBI-ProteinID:
NP_001154716
TAIR:
AT5G18230
UniProt:
F4JWJ7
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Position
5:complement(6021379..6027299)
Genome browser
AA seq
845 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKWNVYDTDNVNQKEKFEADLKKEIKKLQRY
RDQIKTWIQSSEIKDKKVSASYEQSLVDARKLIEKEMERFKICEKETKTKAFSKEGLGQQ
PKTDPKEKAKSETRDWLNNVVSELESQIDSFEAELEGLSVKKGKTRPPRLTHLETSITRH
KDHIIKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQDDFDEFSDVDELYSTLPLDEV
EGLEDLVTAGPLVKGTPLSMKSSLAASASQVRSISLPTHHQEKTEDTSLPDSSAEMVPKT
PPPKNGAGLHSAPSTPAGGRPSLNVPAGNVSNTSVTLSTSIPTQTSIESMGSLSPVAAKE
EDATTLPSRKPPSSVADTPLRGIGRVGIPNQPQPSQPPSPIPANGSRISATSAAEVAKRN
IMGVESNVQPLTSPLSKMVLPPTAKGNDGTASDSNPGDVAASIGRAFSPSIVSGSQWRPG
SPFQSQNETVRGRTEIAPDQREKFLQRLQQVQQGHGNLLGIPSLSGGNEKQFSSQQQNPL
LQQSSSISPHGSLGIGVQAPGFNVMSSASLQQQSNAMSQQLGQQPSVADVDHVRNDDQSQ
QNLPDDSASIAASKAIQSEDDSKVLFDTPSGMPSYMLDPVQVSSGPDFSPGQPIQPGQSS
SSLGVIGRRSNSELGAIGDPSAVGPMHDQMHNLQMLEAAFYKRPQPSDSERPRPYSPRNP
AITPQTFPQTQAPIINNPLLWERLGSDAYGTDTLFFAFYYQQNSYQQYLAAKELKKQSWR
YHRKFNTWFQRHKEPKIATDEYEQGAYVYFDFQTPKDENQEGGWCQRIKNEFTFEYSYLE
DELVV
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atgggtgcgagccggaaattacaaggcgagatagatcgggtgctgaagaaggttcaagaa
ggtgttgatgttttcgacagcatctggaacaagtggaatgtatatgatacagacaatgtt
aatcaaaaggaaaagtttgaggcggacttgaagaaggaaatcaagaagctgcagcggtat
agagaccagatcaagacatggattcagtctagtgagatcaaagataagaaagtcagtgca
tcttatgagcaatccctggtggatgctcggaagcttattgagaaagagatggagaggttt
aagatatgtgaaaaagagaccaagacaaaagccttctccaaggaaggactgggtcagcaa
cctaaaactgacccaaaagagaaagcaaagtcagagacaagggattggttgaacaatgtg
gtgagtgaactggagtcgcagattgatagctttgaagctgagttggaaggactgtctgtc
aaaaaaggaaagacaagaccgcccagattgactcatcttgagacatctattacaagacac
aaggatcacataataaagttggaactgatcttgaggcttctggacaatgatgaattaagt
ccagaacaagtaaatgacgtcaaagattttctggatgattatgttgaacgaaatcaggat
gattttgatgaattcagtgatgtcgatgagctctatagcacgttgccactagatgaggtg
gagggtcttgaagatctagttaccgctggcccacttgtcaagggtactcctttaagcatg
aagagttctttggcagcgtcagcatctcaagttcggagcataagtttgccaactcaccat
caagagaaaacagaggatacatctttaccggatagcagtgctgagatggttccaaaaacc
cctccgccaaagaatggtgcaggccttcactcagcaccatcaacacctgccggaggacgt
ccaagtttgaacgtgcctgccggtaatgtttcaaatacatcagttaccttatcaacttct
attcctactcaaacttccatagaaagcatggggagtttgtctcccgtggctgccaaggaa
gaagacgcaacaaccttgccttctcgtaaaccaccctcatctgttgcggatactccattg
aggggcattggtagagttggtatccccaaccaaccccaaccaagccagcctccgtctcct
attccagctaacgggtctcgcattagtgcaacttcagctgctgaagttgcaaagagaaat
ataatgggagttgagagcaacgtccaacctcttacttctccactgagcaaaatggtgttg
ccaccaactgcaaagggtaatgatggaactgcctctgatagcaaccctggtgatgttgcg
gctagtattggtagagctttttcaccatctattgtatctggttcgcagtggaggcctggt
agtccctttcagagtcagaatgaaacggttcgtgggagaactgaaatagcaccagaccaa
agagagaaattcttacagagattacagcaagtacagcaaggccatggtaacctcttaggc
ataccttctttatctggaggaaacgagaagcagttttcttcacaacagcaaaatcctctt
ttacagcagagctcttccatctctcctcatggaagcttgggaatcggagttcaggcacca
ggttttaatgtcatgagttctgcctccttacagcagcaatcaaatgccatgagtcaacaa
ttgggtcagcaaccttctgttgcagatgtagaccatgtcagaaatgatgatcaatcccag
caaaacttacctgatgattcagcttccatagcagcttcaaaagctattcaaagtgaggat
gactctaaagttctatttgatactccgtcgggaatgcccagctacatgttggatccagta
caagtatctagcggtcctgatttctctcctggacaacctatacaaccgggtcaatcttca
agtagcctcggggtcattggacggagaagtaactctgagttaggagccattggtgaccct
tcagctgtagggccaatgcatgatcaaatgcacaatctccagatgcttgaagctgctttt
tacaaacgtcctcaaccctcagattcagaacgtcctagaccctattctccgaggaaccca
gcaatcacacctcaaacatttccccaaacacaagcaccaatcataaacaaccctttgctc
tgggaacggttaggcagcgatgcttatggaaccgatactttgttctttgcgttctactat
cagcagaactcataccagcaatatcttgctgcaaaagagctgaagaaacagtcatggaga
taccacaggaagttcaacacttggtttcagagacataaagagccaaagattgcaaccgat
gaatatgaacaaggagcctacgtttacttcgatttccaaaccccgaaagacgagaatcaa
gaaggaggatggtgccaaaggatcaaaaacgagttcacatttgaatacagttatcttgaa
gatgaactcgtcgtatag
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integrated database retrieval system
