Arabidopsis thaliana (thale cress): AT5G18440
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Entry
AT5G18440 CDS
T00041
Symbol
NUFIP
Name
(RefSeq) GATA zinc finger protein
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
AT5G18440 (NUFIP)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ath03021
]
AT5G18440 (NUFIP)
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT5G18440 (NUFIP)
Transcription machinery [BR:
ath03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
AT5G18440 (NUFIP)
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
AT5G18440 (NUFIP)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NUFIP1
Motif
Other DBs
NCBI-GeneID:
831962
NCBI-ProteinID:
NP_001078603
TAIR:
AT5G18440
UniProt:
Q5BPJ1
A0A178UB40
LinkDB
All DBs
Position
5:6112738..6115932
Genome browser
AA seq
470 aa
AA seq
DB search
MRPPYNSFQPQARPYRPQHQLQQQQQINGFSNHQQQQHNGYQNPMNANQLGMMNPQMMNN
PMMGHNMPMPNMPIHPQFFNNMPQQLPQFAMPNHINQLLPNLLGNLQFAVANSNLMGHSL
PNFFQPSLEPHAFSSRPQLNSFNSLPYPPVPNPHQNHQSGPPGFSEPRPQGQSVDNTNGS
GPNGNDFRNKFPKHQNFKGPGQGFQRPQLHQADNGKRKSGFNKDHRGKGNNNKMKTGLDG
SDTGNIAKEKKRSYALMYTPREVQQWREARRKNYPTKFLVEKKVKKNVSASILDEEAKMR
RQQLREVLAKQAELGVEVAEVPSHYLSNNDEQVNGDRGNNNGRKGRFQNNRRNKRRHDRK
DKFDNKKPRLEDKKSSQDSSITTRKPTLLEKLLSADIKRDKSQLLQVFRFMVMNSLLKEF
PEQPLKLPLITVKETGCEDAMEDPSIEGLCDGLSDGDDVDGDDSSCDEDV
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgcgacctccgtacaattccttccagcctcaagctcgtccttatcgaccgcaacatcaa
ctacaacaacaacaacagatcaatgggttttctaatcatcaacaacaacaacataatggg
tatcagaacccaatgaacgctaatcaattagggatgatgaatccacagatgatgaataat
ccaatgatgggtcacaacatgccaatgcccaatatgccaatacatcctcagttctttaac
aatatgcctcaacaacttcctcagtttgctatgcccaaccatatcaaccagctacttccc
aatctcttggggaatcttcagtttgcagttgctaacagtaaccttatgggtcactctctt
cccaactttttccagccttctcttgaacctcatgctttctcttctcgaccacagcttaat
tcctttaactcccttccttatcctccggttccaaatccccatcaaaatcaccaatcaggg
cctccgggtttctcagagccaagaccacaggggcagtctgtcgataataccaatggttca
ggtcctaacgggaatgattttcgaaataagtttccaaagcatcaaaatttcaaaggccct
ggtcaaggattccagagacctcagttgcatcaagcagataatggcaagagaaagtctgga
ttcaataaggatcacaggggcaaagggaacaataataagatgaaaacagggctcgatgga
tctgatactggtaacatagctaaggagaagaaaagatcatatgctttgatgtatacacca
agagaagttcagcaatggcgtgaagctcgacgtaagaattatccaacgaaattccttgtt
gaaaagaaagtaaagaaaaatgtttcagccagcatccttgatgaggaagcaaaaatgcgt
cgtcagcaactccgggaagttttagcaaagcaggctgagttaggtgttgaagttgcagaa
gttccttcgcattatttatccaataatgatgaacaagttaatggagatagaggaaacaac
aatgggcgaaagggacgattccagaataatagacgtaataagagaagacatgacagaaaa
gataagtttgataataagaaaccaagattggaagacaaaaaatcgtctcaagattcttcc
ataacgactagaaaacctacattgcttgagaagctcctaagcgcagacataaagagagac
aaaagccagttattacaggtcttccgcttcatggtaatgaattcattgttgaaggagttt
ccagagcaacctctgaagttacctttgattacagtaaaagaaactggctgtgaagatgct
atggaagatccctcaattgaaggtttatgtgatggccttagtgatggcgatgatgtggat
ggcgatgatagctcatgtgatgaagatgtttga
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