Arabidopsis thaliana (thale cress): AT5G20320
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Entry
AT5G20320 CDS
T00041
Symbol
DCL4
Name
(RefSeq) dicer-like 4
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
ath
Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ath03036
]
AT5G20320 (DCL4)
Chromosome and associated proteins [BR:
ath03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
AT5G20320 (DCL4)
microRNA pathway
RISC loading complex
AT5G20320 (DCL4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
DEAD
Helicase_C
ResIII
DND1_DSRM
dsrm
PAZ
Cas3-like_C_2
IstB_IS21
Motif
Other DBs
NCBI-GeneID:
832154
NCBI-ProteinID:
NP_197532
TAIR:
AT5G20320
UniProt:
P84634
Structure
PDB
PDBj
LinkDB
All DBs
Position
5:complement(6859212..6869307)
Genome browser
AA seq
1702 aa
AA seq
DB search
MRDEVDLSLTIPSKLLGKRDREQKNCEEEKNKNKKAKKQQKDPILLHTSAATHKFLPPPL
TMPYSEIGDDLRSLDFDHADVSSDLHLTSSSSVSSFSSSSSSLFSAAGTDDPSPKMEKDP
RKIARRYQVELCKKATEENVIVYLGTGCGKTHIAVMLIYELGHLVLSPKKSVCIFLAPTV
ALVEQQAKVIADSVNFKVAIHCGGKRIVKSHSEWEREIAANEVLVMTPQILLHNLQHCFI
KMECISLLIFDECHHAQQQSNHPYAEIMKVFYKSESLQRPRIFGMTASPVVGKGSFQSEN
LSKSINSLENLLNAKVYSVESNVQLDGFVSSPLVKVYYYRSALSDASQSTIRYENMLEDI
KQRCLASLKLLIDTHQTQTLLSMKRLLKRSHDNLIYTLLNLGLWGAIQAAKIQLNSDHNV
QDEPVGKNPKSKICDTYLSMAAEALSSGVAKDENASDLLSLAALKEPLFSRKLVQLIKIL
SVFRLEPHMKCIIFVNRIVTARTLSCILNNLELLRSWKSDFLVGLSSGLKSMSRRSMETI
LKRFQSKELNLLVATKVGEEGLDIQTCCLVIRYDLPETVTSFIQSRGRARMPQSEYAFLV
DSGNEKEMDLIENFKVNEDRMNLEITYRSSEETCPRLDEELYKVHETGACISGGSSISLL
YKYCSRLPHDEFFQPKPEFQFKPVDEFGGTICRITLPANAPISEIESSLLPSTEAAKKDA
CLKAVHELHNLGVLNDFLLPDSKDEIEDELSDDEFDFDNIKGEGCSRGDLYEMRVPVLFK
QKWDPSTSCVNLHSYYIMFVPHPADRIYKKFGFFMKSPLPVEAETMDIDLHLAHQRSVSV
KIFPSGVTEFDNDEIRLAELFQEIALKVLFERGELIPDFVPLELQDSSRTSKSTFYLLLP
LCLHDGESVISVDWVTIRNCLSSPIFKTPSVLVEDIFPPSGSHLKLANGCWNIDDVKNSL
VFTTYSKQFYFVADICHGRNGFSPVKESSTKSHVESIYKLYGVELKHPAQPLLRVKPLCH
VRNLLHNRMQTNLEPQELDEYFIEIPPELSHLKIKGLSKDIGSSLSLLPSIMHRMENLLV
AIELKHVLSASIPEIAEVSGHRVLEALTTEKCHERLSLERLEVLGDAFLKFAVSRHLFLH
HDSLDEGELTRRRSNVVNNSNLCRLAIKKNLQVYIRDQALDPTQFFAFGHPCRVTCDEVA
SKEVHSLNRDLGILESNTGEIRCSKGHHWLYKKTIADVVEALVGAFLVDSGFKGAVKFLK
WIGVNVDFESLQVQDACIASRRYLPLTTRNNLETLENQLDYKFLHKGLLVQAFIHPSYNR
HGGGCYQRLEFLGDAVLDYLMTSYFFTVFPKLKPGQLTDLRSLSVNNEALANVAVSFSLK
RFLFCESIYLHEVIEDYTNFLASSPLASGQSEGPRCPKVLGDLVESCLGALFLDCGFNLN
HVWTMMLSFLDPVKNLSNLQISPIKELIELCQSYKWDREISATKKDGAFTVELKVTKNGC
CLTVSATGRNKREGTKKAAQLMITNLKAHENITTSHPLEDVLKNGIRNEAKLIGYNEDPI
DVVDLVGLDVENLNILETFGGNSERSSSYVIRRGLPQAPSKTEDRLPQKAIIKAGGPSSK
TAKSLLHETCVANCWKPPHFECCEEEGPGHLKSFVYKVILEVEDAPNMTLECYGEARATK
KGAAEHAAQAAIWCLKHSGFLC
NT seq
5109 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgacgaagttgacttgagcttgaccattccctcgaagcttttggggaagcgagac
agagaacaaaaaaattgtgaagaagaaaaaaacaaaaacaaaaaagctaaaaagcagcaa
aaggacccaattcttcttcacactagtgctgccactcacaagtttcttcctcctcctttg
accatgccgtacagtgaaatcggcgacgatcttcgctcactcgactttgaccacgccgat
gtttcttccgaccttcacctcacttcttcttcctctgtttcttcgttttcctcttcttcg
tcttctttgttctccgcggctggtacggatgatccttcaccgaaaatggagaaagaccct
agaaaaatcgccaggaggtatcaggtggagctgtgtaagaaagcaacggaggagaacgtt
attgtatatttgggtacaggttgtgggaagactcacattgcagtgatgcttatatatgag
cttggtcatttggttcttagtcccaagaaaagtgtttgtatttttcttgctcccaccgtg
gctttggtcgaacagcaagccaaggtcatagcggactctgtcaacttcaaagttgcaata
cattgtggaggcaagaggattgtgaagagccactcggagtgggagagagagattgcagcg
aatgaggttcttgttatgactccacaaatacttctgcataacttacagcactgtttcatc
aagatggagtgtatctcccttctaatatttgatgagtgtcaccatgctcaacaacaaagc
aaccatccttatgcagaaatcatgaaggttttctataaatcggaaagtttacaacggcct
cgaatatttggaatgactgcatctccagttgttggcaaagggtcttttcaatcagagaat
ttatcgaaaagcattaatagccttgaaaatttgctcaatgccaaggtttattcagtggaa
agcaatgtccagctggatggttttgtttcatctcctttagtcaaagtatattattatcgg
tcagctttaagtgatgcatctcaatcgaccatcagatatgaaaacatgctggaggacatc
aaacagcggtgcttggcatcacttaagctgctgattgatactcatcaaacacaaaccctc
ctaagtatgaaaaggcttctcaaaagatctcatgataatctcatatatactctgctgaat
cttggcctctggggagcaatacaggctgctaaaatccaattgaatagtgaccataatgta
caagacgagcctgtgggaaagaatcctaagtcaaagatatgtgatacatatctttctatg
gctgctgaggccctctcttctggtgttgctaaagatgagaatgcatctgacctcctcagc
ttagcggcgttgaaggaaccattattctctagaaagctagttcaattgattaagatcctt
tcggtattcaggctagagccacacatgaaatgtataatatttgtcaatcggattgtgact
gcaagaacattgtcatgcatactaaataacttggaactgctacggtcttggaagtctgat
ttccttgttggacttagttctggactgaagagcatgtcaagaaggagtatggaaacaata
cttaaacggttccaatctaaagagctcaatttactggttgccactaaagttggtgaagaa
ggccttgatattcagacatgctgtcttgtgatccgttatgatttaccagagactgttacc
agcttcatacagtccagaggtcgtgctcgaatgcctcagtctgaatatgcgtttctagtg
gacagcggaaacgagaaagagatggatcttattgaaaattttaaagtaaatgaagatcga
atgaatctagaaattacttacagaagctcagaggaaacttgtcctagacttgatgaggag
ttatacaaagttcatgagacaggagcttgtatcagtggtggaagcagcatctcccttctc
tataaatattgttctaggcttccacatgatgaattttttcagcccaagccagagtttcaa
ttcaagcctgttgacgaatttggtggaactatctgtcgcataactttacctgctaatgct
cctataagtgaaatcgaaagttcactactaccttcgacagaagctgctaaaaaggatgct
tgtctaaaggctgtgcatgagttgcacaacttgggtgtacttaacgattttctgttgcca
gattccaaggatgaaattgaggacgaattgtcagatgatgaatttgattttgataacatc
aaaggtgaaggctgttcacgaggtgacctgtatgagatgcgtgtaccagtcttgtttaaa
caaaagtgggatccatctacaagttgtgtcaatcttcattcttactatataatgtttgtg
cctcatcccgctgataggatctacaaaaagtttggtttcttcatgaagtcacctcttccc
gttgaggctgagactatggatatcgatcttcaccttgctcatcaaagatctgtaagtgta
aagatttttccatcaggggtcacagaattcgacaacgatgagataagactagctgagctt
ttccaggagattgccctgaaggttctttttgaacggggggagctgatcccggactttgtt
cccttggaactgcaagactcttctagaacaagcaaatccaccttctaccttcttcttcca
ctctgtctgcatgatggagaaagtgttatatctgtagattgggtgactatcagaaactgc
ttgtcatcaccaatctttaagactccatctgttttagtggaagatatatttcctccttcg
ggctctcatttaaagctagcaaatggctgctggaatattgatgatgtgaagaacagcttg
gtttttacaacctacagtaaacaattttactttgttgctgatatctgccatggaagaaat
ggtttcagtcctgttaaggaatctagcaccaaaagccatgtggagagcatatataagttg
tatggcgtggaactcaagcatcctgcacagccactcttgcgtgtgaaaccactttgtcat
gttcggaacttgcttcacaaccgaatgcagacgaatttggaaccacaagaacttgacgaa
tacttcatagagattcctcccgaactttctcacttaaagataaaaggattatctaaagac
atcggaagctcgttatccttgttaccatcaatcatgcatcgtatggagaatttactcgtg
gctattgaactgaaacatgtgctgtctgcttcgatccctgagatagctgaagtttctggt
cacagggtactcgaggcgctcacaacagagaaatgtcatgagcgcctttctcttgaaagg
cttgaggtgcttggtgatgcattcctcaagtttgctgttagccgacacctttttctacac
catgatagtcttgatgaaggagagttgactcggagacgctctaacgttgttaacaattcc
aacttgtgcaggcttgcaataaaaaaaaatctgcaggtctacatccgtgatcaagcattg
gatcctactcagttctttgcatttggccatccatgcagagtaacctgtgacgaggtagcc
agtaaagaggttcattccttgaatagggatcttgggatcttggagtcaaatactggtgaa
atcagatgtagcaaaggccatcattggttgtacaagaaaacaattgctgatgtggttgag
gctcttgtgggagctttcttagttgacagtggcttcaaaggtgctgtgaaatttctgaag
tggattggtgtaaatgttgattttgaatccttgcaagtacaagatgcttgtattgcaagc
aggcgctacttgcccctcactactcgcaataatttggagacccttgaaaaccagcttgac
tataagttcctccacaaaggtctacttgtacaagcctttatccatccatcttacaacagg
catggaggaggctgctaccagagattggagtttcttggggatgctgttctggactacttg
atgacatcctattttttcacagtcttcccgaaactgaaacctggtcaactgaccgatcta
agatctctctcagtaaataatgaggcgctagcaaatgttgctgtcagtttttcgctaaag
agatttctattttgcgagtccatttatcttcatgaagttatagaggattataccaatttc
ctggcatcttccccattggcaagtggacaatctgaaggtccaagatgcccaaaggttctt
ggtgacttggtagaatcctgtttgggggctcttttcctcgattgtgggttcaacttgaat
catgtctggactatgatgctatcatttctagatccggtcaaaaacttgtctaaccttcag
attagtcctataaaagaactgattgaactttgccagtcttacaagtgggatcgggaaata
tcagcgacgaaaaaggatggtgcttttactgttgaactaaaagtgaccaagaatggttgt
tgccttacagtttctgcaactggtcggaacaaaagagagggcacaaaaaaggctgcacag
ctgatgattacaaacctgaaggctcatgagaacataacaacctcccatccgttggaggat
gttctgaagaatggcatccgaaatgaagctaaattaattggctacaatgaagatcctata
gatgttgtggatcttgttgggctggacgttgaaaacctaaatatcctagaaacttttggc
gggaatagtgaaagaagcagctcatacgtcatcagacgaggtctcccccaagcaccatct
aaaacagaagacaggcttcctcaaaaggccatcataaaagcaggtggaccaagcagcaaa
accgcaaaatccctcttgcacgaaacatgtgttgctaactgttggaagccaccacacttc
gaatgttgtgaagaggaaggaccaggccacctgaaatcattcgtctacaaggtaatcctg
gaagttgaagatgcgcccaatatgacattggaatgttatggtgaggctagagcaacgaag
aaaggtgcagcagagcacgctgcccaagctgctatatggtgcctcaagcattctggattc
ctttgctga
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integrated database retrieval system
