Arabidopsis thaliana (thale cress): AT5G22250
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Entry
AT5G22250 CDS
T00041
Symbol
CAF1b
Name
(RefSeq) Polynucleotidyl transferase, ribonuclease H-like superfamily protein
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AT5G22250 (CAF1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT5G22250 (CAF1b)
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
AT5G22250 (CAF1b)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
AT5G22250 (CAF1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNase_H_2
Motif
Other DBs
NCBI-GeneID:
832285
NCBI-ProteinID:
NP_197617
TAIR:
AT5G22250
UniProt:
Q9FMS6
A0A178UEK4
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All DBs
Position
5:complement(7365477..7366799)
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AA seq
278 aa
AA seq
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MIKSEADLSDVIVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRG
NPNYLYNLLKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHA
PDSIELLRRHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKIL
TRRQLPVALREFLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQ
AGSDSLLTWQAFQRMRDLYFVEDGAEKHAGVLYGLEVF
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
atgatcaaatcagaagcagatctctccgatgtgatcgtgattcgtgacgtttgggcttat
aatctcgagtcagagtttgacctaatcagaggaatcgtcgaagattacccattcatctca
atggatacagaatttcccggcgtgatttacaaggcggatctcgacgttctccgccgtgga
aaccctaattatctctacaatcttctcaaatccaacgttgacgctttaagtttgatccaa
gtcggtcttactctctccgacgccgacggaaacctcccagatctcggcggtcaaaaaaac
cgtcgatacatctgggaattcaatttccgtgacttcgacgtggagcgtgatccacacgct
cctgattcgatcgagctactccgtcgtcacgggatcgatttcgagcggaaccgtcgcgaa
ggtgttgaatcggagaggttcgcggagctgatgatgtcatcggggttgatctgtaacgag
tctgtgagctgggtgacgtttcacagcgcgtatgattttggttaccttgtgaagattctc
acgcgccggcagcttccggtggcgttgcgtgagtttttagggttgcttagagctttcttc
ggtgatagggtttatgatgtgaaacatattatgaggttttgtgagcagagattgtatggt
ggtttggaccgggttgctcggtctcttgaagttaaccgggcggttgggaaatgtcatcaa
gccggttcggatagtttgctgacgtggcaggcgtttcagaggatgagggatttgtatttc
gttgaggatggggcggagaaacacgccggagttttgtatggtttagaggttttttga
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integrated database retrieval system
