Arabidopsis thaliana (thale cress): AT5G23880
Help
Entry
AT5G23880 CDS
T00041
Symbol
CPSF100
Name
(RefSeq) cleavage and polyadenylation specificity factor 100
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
AT5G23880 (CPSF100)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT5G23880 (CPSF100)
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
AT5G23880 (CPSF100)
U7-dependent histone pre-mRNA processing factors
AT5G23880 (CPSF100)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
Beta-Casp
CPSF100_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-GeneID:
832453
NCBI-ProteinID:
NP_197776
TAIR:
AT5G23880
UniProt:
Q9LKF9
LinkDB
All DBs
Position
5:8052439..8058465
Genome browser
AA seq
739 aa
AA seq
DB search
MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLIDCGWNDLFDTSLLEPLSRVASTIDAVLL
SHPDTLHIGALPYAMKQLGLSAPVYATEPVHRLGLLTMYDQFLSRKQVSDFDLFTLDDID
SAFQNVIRLTYSQNYHLSGKGEGIVIAPHVAGHMLGGSIWRITKDGEDVIYAVDYNHRKE
RHLNGTVLQSFVRPAVLITDAYHALYTNQTARQQRDKEFLDTISKHLEVGGNVLLPVDTA
GRVLELLLILEQHWSQRGFSFPIYFLTYVSSSTIDYVKSFLEWMSDSISKSFETSRDNAF
LLRHVTLLINKTDLDNAPPGPKVVLASMASLEAGFAREIFVEWANDPRNLVLFTETGQFG
TLARMLQSAPPPKFVKVTMSKRVPLAGEELIAYEEEQNRLKREEALRASLVKEEETKASH
GSDDNSSEPMIIDTKTTHDVIGSHGPAYKDILIDGFVPPSSSVAPMFPYYDNTSEWDDFG
EIINPDDYVIKDEDMDRGAMHNGGDVDGRLDEATASLMLDTRPSKVMSNELIVTVSCSLV
KMDYEGRSDGRSIKSMIAHVSPLKLVLVHAIAEATEHLKQHCLNNICPHVYAPQIEETVD
VTSDLCAYKVQLSEKLMSNVIFKKLGDSEVAWVDSEVGKTERDMRSLLPMPGAASPHKPV
LVGDLKIADFKQFLSSKGVQVEFAGGGALRCGEYVTLRKVGPTGQKGGASGPQQILIEGP
LCEDYYKIRDYLYSQFYLL
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgggtacttcggtgcaagtgactcctctctgcggagtttacaacgagaatcctctctcc
tacttagtctccattgatggtttcaacttcctcatcgactgtggttggaacgatctcttc
gacacatcgctcctcgaacctctctccagggttgcttctactatagatgcagttttgctt
tctcatccagatacacttcacattggtgctcttccttatgctatgaagcagcttggactc
tccgctcctgtttatgctactgagcctgttcatagattaggtctccttacaatgtatgat
cagtttttgtccaggaagcaagtatccgactttgatctgtttacactggatgacatagat
tctgctttccagaatgtgatcagattgacttactctcaaaattaccatctttctggaaag
ggagagggtattgtaattgctcctcatgttgctggacacatgctgggaggtagcatctgg
aggataacaaaggatggggaggatgttatatatgctgttgactacaatcatcggaaagaa
aggcatttgaatggaactgttttacagtcttttgttcggcctgctgttctgataaccgat
gcatatcatgctctttataccaatcaaaccgcaagacagcaaagggacaaagaatttcta
gataccatttcaaaacatcttgaagttggaggaaatgttctattgccagtagacactgcg
ggtcgtgtcctggaacttctcttgatacttgaacagcattggtcacaaagaggtttcagc
tttcccatttattttctcacgtacgtgtcatctagcacaattgactatgttaagagtttc
ctcgagtggatgagtgactccatttcaaagtcctttgagacttcacgtgataatgccttt
ctattgaggcatgtcactctgttgataaacaagactgatctggataatgctccacctggt
ccaaaggttgttcttgcttccatggctagtctcgaagccggttttgctcgagagatattc
gtggagtgggcaaatgatcccagaaatttagtcctctttactgaaacaggccagtttggc
actttagctcgtatgcttcagtcagccccacctccaaaatttgttaaagtcaccatgtct
aagagggttcctttggctggggaagagttaattgcatatgaggaagagcaaaacagactg
aaaagggaagaagctttgcgagctagcctcgttaaagaggaggaaacaaaagcttcccat
ggatccgatgataattcaagtgaacctatgatcatagataccaagactactcacgatgtt
attggttctcacgggcctgcatataaagatatattgattgatggatttgttcccccatcc
agcagcgtagctccaatgttcccatattatgataacacatctgaatgggacgactttggg
gagattattaatccagatgactatgtgatcaaggatgaagacatggaccgaggagcaatg
cataacggaggtgatgtggacggaaggcttgatgaggcaactgctagtctcatgcttgat
acaagaccttcgaaagtcatgtccaatgagctcattgtgactgttagttgttcacttgtt
aaaatggactatgaaggtcggtcagatggccgctcaatcaagtcaatgattgcgcatgtt
tctcctttaaaacttgttttggtgcacgcgatagctgaggctacagagcatttgaagcaa
cactgcttgaacaacatctgtccacacgtgtatgctcctcaaatagaggaaacggtcgat
gtgacttctgatttatgtgcttacaaggtccaactttctgaaaagctgatgagcaatgtg
atcttcaagaagctgggagattcagaagtagcttgggtggattccgaagtagggaagaca
gagagggacatgaggtctctactaccgatgccaggtgctgcttcgccacacaaacctgtt
ctagtaggtgatctgaaaatcgcagacttcaagcagtttctgtcgagcaagggtgttcag
gtagaatttgcaggtggaggagctttacgttgtggtgaatatgtcactctacgaaaggtt
ggaccgacgggtcaaaagggaggagcatcgggtccacagcaaattctgatagaaggaccg
ttgtgtgaagactattacaaaatcagggattatctctattctcagttctacctcctctga
DBGET
integrated database retrieval system
