KEGG   Arabidopsis thaliana (thale cress): AT5G25150
Entry
AT5G25150         CDS       T00041                                 
Symbol
TAF5
Name
(RefSeq) TBP-associated factor 5
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    AT5G25150 (TAF5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ath03021]
    AT5G25150 (TAF5)
   03036 Chromosome and associated proteins [BR:ath03036]
    AT5G25150 (TAF5)
Transcription machinery [BR:ath03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     AT5G25150 (TAF5)
   Coactivators
    SAGA/TFTC/STAGA complex
     AT5G25150 (TAF5)
Chromosome and associated proteins [BR:ath03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     AT5G25150 (TAF5)
    STAGA complex
     AT5G25150 (TAF5)
    TFTC complex
     AT5G25150 (TAF5)
    SAGA complex
     AT5G25150 (TAF5)
    SLIK complex
     AT5G25150 (TAF5)
SSDB
Motif
Pfam: WD40 WD40_Prp19 TFIID_NTD2 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_TEP1_2nd EIF3I WD40_MABP1-WDR62_2nd WDR55 Beta-prop_WDR90_POC16_2nd NBCH_WD40 Beta-prop_EML ANAPC4_WD40 Beta-prop_IFT122_1st Beta-prop_TEP1_C WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Beta-prop_IFT140_1st Beta-prop_WDR75_1st Beta-prop_RIG_2nd Beta-prop_SCAP Beta-prop_WDR19_1st Beta-prop_DCAF4 Beta-prop_EIPR1 Beta-prop_Vps41 Beta-prop_SPT8 Beta-prop_Nup120_160 WD40_RFWD3 Beta-prop_HPS5 Beta-prop_WDR35_TULP_N eIF2A RAB3GAP2_N Cytochrom_D1 WD40_like Beta-prop_RIG_1st LisH FdhD-NarQ
Other DBs
NCBI-GeneID: 832586
NCBI-ProteinID: NP_197897
TAIR: AT5G25150
UniProt: Q6S7B0 A0A5S9Y727
LinkDB
Position
5:8677049..8682344
AA seq 669 aa
MDPEQINEFVVGYLKKKGFSSAAKDLESYHHQNNNGSSFTSVDYHNDPELTKLIRSFSQQ
EDDPTRYREGYSKLRSWAYNSLDLYKHELLRVMYPVFIHCYMDLVGKGHTQEARAFFNSF
RKDHEMVHLRDLQKLEGVLSPSHLEEMEFARSLRKSKVNIKFCQYSYELLLQYLHSTVST
LMLGIINEHINFQVYSGQPTSSSDDIEAVTIVGSFQDTANHINQKEIQWGLLEDSLEDRL
EKTGGLLSDSEKGQGESKDGDADDSKKRSTEIGKQGSSLKKLKKDKAGNATAKVARLETI
TVSPAPRVKPELALPVMSTDVEQSILEDLRNRVQLSSVAMPSVSFYTFVNTHNGLNCSSI
SHDGSLVAGGFSDSSIKVWDMAKIGQAGSGALQAENDSSDQSIGPNGRRSYTLLLGHSGP
VYSATFSPPGDFVLSSSADTTIRLWSTKLNANLVCYKGHNYPVWDAQFSPFGHYFASCSH
DRTARIWSMDRIQPLRIMAGHLSDVDCVQWHPNCNYIATGSSDKTVRLWDVQTGECVRIF
IGHRSMVLSLAMSPDGRYMASGDEDGTIMMWDLSTARCITPLMGHNSCVWSLSYSGEGSL
LASGSADCTVKLWDVTSSTKLTKAEEKNGNSNRLRSLRTFPTKSTPVHALRFSRRNLLFA
AGAISKPAN
NT seq 2010 nt   +upstreamnt  +downstreamnt
atggatccagagcaaatcaacgagttcgtcgtgggctacttgaagaagaaaggattcagt
agcgctgctaaagaccttgaatcttatcatcaccagaacaataatggtagctccttcact
tctgtcgattatcataacgatcctgagctcacgaagctcattcgctccttttctcaacaa
gaagatgatccaactcggtaccgtgaaggttacagcaaactaaggtcatgggcgtataat
tctctggatttatataagcatgaattgcttcgagtgatgtatcctgtgtttattcattgt
tacatggatctggtggggaaagggcacactcaagaagctagagccttctttaacagcttc
cgcaaagatcatgagatggtacacttacgggatcttcagaagcttgaaggcgtgctttct
ccatctcatctagaggagatggagtttgctcgttctcttagaaaaagcaaggttaacatc
aagttttgtcagtattcatatgagctgttacttcagtatctacatagtacagtatcgact
ttaatgcttggtattattaacgagcacatcaatttccaagtctactcgggacagcctact
tcctcatccgatgacatagaagctgtcaccattgtcgggagttttcaggacactgctaat
cacattaatcaaaaagaaatacagtggggattgcttgaagattcactagaagatcgcctt
gagaagacaggaggtctgctgtctgattctgagaagggacaaggagaaagtaaagacggg
gatgcagatgatagtaagaaaagatccactgaaattggaaagcaaggctcttccttaaaa
aagttgaagaaggacaaagcgggtaatgcaacagcaaaagttgcacgtctggagaccatt
acggtgtcaccggcgccgcgtgtaaaaccagaacttgccttgccagtaatgtccacagat
gtagagcaatccatccttgaagaccttagaaaccgtgtgcagttgagtagtgttgcaatg
ccatcagtcagcttttatacatttgtgaatactcataacgggttaaactgttcatctata
tctcatgatggatctctggttgctggtgggttctcagattcttcaataaaggtctgggac
atggctaagataggacaagctggcagtggtgctttgcaggctgaaaatgattcaagtgat
caaagcataggaccaaatggcagaagaagttatacattattactgggtcattcagggcca
gtttactcagccactttcagtccccctggagattttgttctatcttcttcagcagataca
acaatacgactgtggagcacaaaactaaatgctaatctcgtgtgctacaagggtcataat
taccctgtatgggatgcccagtttagccctttcggtcattactttgcaagctgttctcat
gatcgtactgcacggatttggtcaatggaccgaatacaacctcttcggataatggcaggg
catctatctgatgttgattgtgtacagtggcatcccaattgtaactacattgctaccggt
agtagtgataagacggttagactctgggatgtgcaaactggagaatgtgtccggatattc
attgggcacaggagtatggttttatcattggcgatgtctccagatgggagatatatggct
tccggtgatgaagatggcactataatgatgtgggacctctcaactgctcgctgcatcact
cctctcatgggccataattcatgtgtctggagtctctcatacagcggggagggctctctt
ctggcttctggatccgcagactgcacagtgaaactgtgggacgtcacttcaagtaccaaa
ttgacaaaggccgaggaaaagaatggaaactcgaacagattgcgctcactcaggactttc
cccaccaagtccacaccagttcacgctctccggttttctcggagaaatttgttgtttgct
gcaggagcgatctctaaacccgcaaactga

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