Arabidopsis thaliana (thale cress): AT5G27720
Help
Entry
AT5G27720 CDS
T00041
Symbol
emb1644
Name
(RefSeq) Small nuclear ribonucleoprotein family protein
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03018
RNA degradation
ath03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
AT5G27720 (emb1644)
09123 Folding, sorting and degradation
03018 RNA degradation
AT5G27720 (emb1644)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT5G27720 (emb1644)
03041 Spliceosome [BR:
ath03041
]
AT5G27720 (emb1644)
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
AT5G27720 (emb1644)
mRNA degradation factors
5'-3' decay
Lsm complex
AT5G27720 (emb1644)
Spliceosome [BR:
ath03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
AT5G27720 (emb1644)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
832834
NCBI-ProteinID:
NP_198124
TAIR:
AT5G27720
UniProt:
F4K4E3
A0A178UIB9
LinkDB
All DBs
Position
5:9815500..9817618
Genome browser
AA seq
129 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEEKTRTDRKPPGVGRGRGRGVDDGGARGRGRGTSMGKMGG
NRGAGRGRG
NT seq
390 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctctatcgctgcttaaaactgctcaagggcatcctatgctcgtggagcttaag
aatggagagacatacaatgggcatttggtgaattgtgatacttggatgaacatccatctg
cgtgaagtcatatgtacatcaaaggacggagatagattttggaggatgccggaatgttat
atccgtggtaacacaatcaagtaccttcgagttccggatgaggtgattgataaagtacag
gaggagaagacacgcacagatagaaaaccaccaggtgttggacgtggaagaggacgtggt
gtggatgatggaggagccagaggcagaggcagaggaacttcaatggggaagatgggtggc
aacagaggagcaggtcgcggccgtggttga
DBGET
integrated database retrieval system
